Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01638 ATGGATTTGAAGTCCTCTCATCATGTTTCTCCTGTTCTTACTGATCCTGTTCCTGTCAACAAGTCAAGGCTTCGAATGCATTCAAGTTTGCTAGCTTATTCACAGCAAGATCCATCACTCTCTCCCGGGAAGTTCTCAAGAAGCAATTCAAGGAAAAGTACGGGGAGTGTGGATGATGTCAGGTCCAATGGTTGGTTGGACGCCATGAAGGCTTCTTCGCCTCCTAGGAAGAAGCTACTTAAAGGGTCCAGTGCTCAGCTTGAATATCCGTCAGCACTAGACTCTTTTGAGAAAATCATTGACCTTGCAAAGAATAAGCAGATTGCAATGTTTCTAGATTATGATGGCACACTTTCACCAATAGTAGATGATCCGGATTGTGCCTTTATGTCCGAATCTATGCGTACAACTGTGAGAAGTGTGGCAAAATATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTAGTTAAATTAACAGAACTCTACTACGCTGGAAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAAATTGTGTCAAGTCTACTGACCAACAGGGAAACGAGATAACTCTCTTTCAACCTGCAAGAGAATTCCTGCCTATGATTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATACAAGGCGCAAAAGTTGAAAATCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGATGAGAATAATTGGACAACAATTGGACAACGTGTCCATGATGTCTTGAAAAATTACCCTCGTTTACGTTCCACTCATGGACGGAAGGTTTTAGAAGTTCGTCCTGTGATTGATTGGAATAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGGTTAACTGATAGGAATGATGTTCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAATCGAGGTTTTGGGATTTTGGTTTCGTCGGTTAGGAAAGAAAGCAATGCCTTTTACTCTCTCCGAGACCCCAATGAGGTTCAAATCCCAACATAA 1086 0.4134 MDLKSSHHVSPVLTDPVPVNKSRLRMHSSLLAYSQQDPSLSPGKFSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSAQLEYPSALDSFEKIIDLAKNKQIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSTDQQGNEITLFQPAREFLPMIDEVFRTLVEITKDIQGAKVENHKFCVSVHYRNVDENNWTTIGQRVHDVLKNYPRLRSTHGRKVLEVRPVIDWNKGKAVEFLLESLGLTDRNDVLPIYIGDDKTDEDAFKVLRESNRGFGILVSSVRKESNAFYSLRDPNEVQIPT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01638 361 SUPERFAMILY HAD-like 109 357 IPR036412 -
Pumo4g01638 361 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 43 358 IPR044651 GO:0004805|GO:0005992
Pumo4g01638 361 MobiDBLite consensus disorder prediction 33 68 - -
Pumo4g01638 361 FunFam Trehalose 6-phosphate phosphatase 108 197 - -
Pumo4g01638 361 FunFam Trehalose 6-phosphate phosphatase 215 359 - -
Pumo4g01638 361 Gene3D - 207 359 IPR023214 -
Pumo4g01638 361 Gene3D - 108 196 IPR023214 -
Pumo4g01638 361 Pfam Trehalose-phosphatase 111 354 IPR003337 GO:0003824|GO:0005992
Pumo4g01638 361 CDD HAD_TPP 109 357 - -
Pumo4g01638 361 NCBIfam HAD-IIB family hydrolase 110 328 IPR006379 -
Pumo4g01638 361 MobiDBLite consensus disorder prediction 33 60 - -
Pumo4g01638 361 NCBIfam trehalose-phosphatase 106 357 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01638 Pumo-Chr4 20704446 20706789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01638 104 357 Trehalose Biosynthesis Gene Families AT1G70290 26.838 3.59e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01638 K01087 - tcc:18606311 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01638 4 20704446 20706789 Pumo4g01638 4 20704446 20706789 ECH