Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01634 ATGTCATCCTCTTCCACCACATTATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTCCTCGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACCGTCACTGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTGAACATGCGCGGCTTGCTTGTGCCATCTCCCACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCTCATAACCTTCTGGAGGAGATACCAAACCCCACTCCAAATTTTCTTATGAACCAAACAAATTTAAGTGCATCAAATGAGTTCTCTATGCCTGCTAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCATAAATAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCAGCGTACAACCGCTTTATTAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCAAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAGGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4799 MSSSSTTLSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSHNLLEEIPNPTPNFLMNQTNLSASNEFSMPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01634 215 Gene3D High mobility group box domain 124 187 IPR036910 -
Pumo4g01634 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Pumo4g01634 215 CDD HMG-box_SF 133 169 - -
Pumo4g01634 215 FunFam Axial regulator YABBY 124 195 - -
Pumo4g01634 215 PANTHER PROTEIN YABBY 6-RELATED 1 189 IPR006780 GO:0007275
Pumo4g01634 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01634 Pumo-Chr4 20640292 20643549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01634 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 7.45e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pumo4g01634 YABBY 1.1e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01634 K25796 - gmx:100798441 433.721