Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01633 ATGAACACATTTTCACATGTACCTCCAGGCTTTCGGTTTCATCCAACCGATGAAGAACTTGTCGGTTACTACCTTAGGAAAAAGGTAGCCTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGAATTATGCAAAATAGGAACGGATGAACAAAATGACTGGTATTTCTTCAGTCATAAAGATAAGAAATACCCAACTGGAACTCGCACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCAATATACTCTAAGCATTGCTTGATTGGCATGAGAAAGACACTAGTGTTTTACAAAGGACGAGCACCAAATGGACAGAAATCTGATTGGATCATGCATGAGTACAGGCTAGAAACTAATGAAAATGGAACTCCTTCGGAAGAAGGCTGGGTTGTGTGTAGAGTGTTCAAGAAGCGAATGACAACAATGCAGAAAGTGGGAGAGTATGATCAATCACCCTGTTGGTACGATGAGCAAGTTTCCTTCATGCAAGATCTTGAATCCCCCAGGCGCATTTCTCAGCCTTATGCATCATACCACCACCCCTGCAAGCCTGAGCTCATGGAATTGCAATACAACATTCCCCACGATGCATTCCTCCAACTTCCACAACTTGAAAGCCCCAAAGTTACTCAATCTGCAGCCAGTTTGAGTTGCAGCTCAGTTGTCCCTTATGGCTATGAAACCAACAACAACAATGGAAGCAGCACCTTGCAGTTCTCTTCACTCACTCAGGAAGAACAGATACAATATTGCACTCAACAAAGTCAACATTCTCTCTATGGTAGCAATGATCATGCGGTTGACCAGGTCACAGATTGGCGAGTACTTGACAAATTTGTTGCTTCTCAGCTCAGTCACAACCAAGATGTTTCCAAAGAAACCAGTTACTCCAATGCACCTATCTTCCATGTGGCTGAACAAGTTTCTGTGGTTGCAAACGGGTCCAAAAAGGAGCAAATTTCCCAGGAGTATGCTTCAACGTCTACCTCCAGTTGCCAGATTGACCTGTGGAAGTGA 1074 0.433 MNTFSHVPPGFRFHPTDEELVGYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTPSEEGWVVCRVFKKRMTTMQKVGEYDQSPCWYDEQVSFMQDLESPRRISQPYASYHHPCKPELMELQYNIPHDAFLQLPQLESPKVTQSAASLSCSSVVPYGYETNNNNGSSTLQFSSLTQEEQIQYCTQQSQHSLYGSNDHAVDQVTDWRVLDKFVASQLSHNQDVSKETSYSNAPIFHVAEQVSVVANGSKKEQISQEYASTSTSSCQIDLWK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01633 357 FunFam NAC domain-containing protein 16 160 - -
Pumo4g01633 357 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Pumo4g01633 357 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Pumo4g01633 357 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Pumo4g01633 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 272 - -
Pumo4g01633 357 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01633 Pumo-Chr4 20619173 20625146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01633 1 357 NAC Transcription Factor Family AT1G12260 58.904 4.78e-140 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo4g01633 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01633 - - gmx:100783529 672.93