Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01630 ATGGCCGAGGAAGCCAAAGCCAAAGGCAACGCGGCATTCTCTGCCGGCGACTTCACCGCTGCAGTTCGCCACTTCACGGACGCGATCGCCCTGGCGCCCTCGAACCACGTCCTCTACTCGAACCGATCCGCGGCCCACGCCTCCCTACAGAACTACGCCGAAGCCTTAGCCGACGCCCAGAAGACCGTGGACCTCAAGCCCGACTGGCCCAAGGGCTACAGCCGCCTCGGCGCCGCCCACCTCGGCCTCCGCCGCCACCGCGACGCCGTCTCCGCCTACAAAGCCGGCCTCAAGCTCGACCCCGAAAACGCCGCCCTCAAATCCGGCTTAGCCGACGCCCAAGCCGCTGCCTCCCGGCCGCCCCCCAACAGTCCCTTCGCCACGGCCTTCTCCGGCCCCGACATGTGGGCCCGCCTCACCGCGGACCCCACCGCACGTGGCCATCTGGAGGACCCCGAGTTCGTGAAGATCATGCAGGACATCCAGAAGGACCCCAACAAGTTCAACTTGCATTTGAGTGACCAGAGGGTCATGCATGCCATTGGGGTTTTGCTCAATGTCAAAATTCAAACCCCTAATGATGATGAGGACGCTGCTGGTGATGATGTGTCCGAGGAGGAGGAGGAGCGGGACGAGCCTGTTTCCCAGCCTGAAGTGACGGAGGAGGAGGAGGAGAAGGATAGGAAGGGGGAGGCTCAGAAGGAGAAGGAAGCTGGGAATGCGGCTTACAAGAAGAAGGATTTCGAAACCGCCATTGGACATTACACCAATGCTTTGGAGTTGGATGATGAGGATATTTCCTACCTTACTAATCGTGCCGCTGTTTACTTGGAGATGGGAAAGTTTGAGGACTGCATAAAAGATTGTGAAAAAGCTGTTGAAAGGGGAAGAGAACTAAGATCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGTACTGCATTGGTCAAAATGGCAAAATGCTCTAAGGATTTTGAATCTGCCATTGAGACTTTCCAGAAAGCACTTACAGAGCACCGTAACCCGGACACCTTGAAGAAACTGAATGAAGCTGAAAGGGCTAAGAAAGAACTAGAGCAACAAGAATATTTTGATCCAAAATTAGCTGATGAGGAGAGAGAAAAAGGAAATGAATTATTCAAGCAGCAGAAGTATCCTGAGGCTATGGAGCATTATACAGAAGCTATAAAAAGGAACCCAAAAGATCCTAAGGCTTACAGTAACAGAGCTGCATGCTATACAAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAATGCATTGAGCTTGATCCAACCTTTTCAAAGGGTTATACTAGGAAAGGTGCAGTGCAATTTTTCATGAAAGAATATGACAAAGCTTTGGAAACATACAGGGAGGGGTTGAAACATGACCCTAACAATCAGGATTTGCATGATGGCATTACAAGATGTGTAGAACAAATTAATAAGGCTAGCCGTGGAGATTTTACTCCCGATGAGTTAAAGGAGAGACAGGCCAAGGCGATGCAAGACCCAGAGATACAGAGTATCCTCCAAGACCCTGTTATGAGACAAGTATTGGTTGATTTCCAGGAAAATCCCAGAGCTGCACAGGAACATACAAAGAATCCAATGGTGATGAACAAGATTCAAAAGCTTATCAGTGCTGGGATTGTCCAGACGAAATGA 1683 0.5074 MAEEAKAKGNAAFSAGDFTAAVRHFTDAIALAPSNHVLYSNRSAAHASLQNYAEALADAQKTVDLKPDWPKGYSRLGAAHLGLRRHRDAVSAYKAGLKLDPENAALKSGLADAQAAASRPPPNSPFATAFSGPDMWARLTADPTARGHLEDPEFVKIMQDIQKDPNKFNLHLSDQRVMHAIGVLLNVKIQTPNDDEDAAGDDVSEEEEERDEPVSQPEVTEEEEEKDRKGEAQKEKEAGNAAYKKKDFETAIGHYTNALELDDEDISYLTNRAAVYLEMGKFEDCIKDCEKAVERGRELRSDYKMIARALTRKGTALVKMAKCSKDFESAIETFQKALTEHRNPDTLKKLNEAERAKKELEQQEYFDPKLADEEREKGNELFKQQKYPEAMEHYTEAIKRNPKDPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMKEYDKALETYREGLKHDPNNQDLHDGITRCVEQINKASRGDFTPDELKERQAKAMQDPEIQSILQDPVMRQVLVDFQENPRAAQEHTKNPMVMNKIQKLISAGIVQTK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01630 560 Coils Coil 343 363 - -
Pumo4g01630 560 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 492 560 - -
Pumo4g01630 560 Pfam TPR repeat 239 280 - -
Pumo4g01630 560 Pfam TPR repeat 378 419 - -
Pumo4g01630 560 Pfam STI1 domain 501 552 IPR041243 -
Pumo4g01630 560 Pfam STI1 domain 133 186 IPR041243 -
Pumo4g01630 560 FunFam hsp70-Hsp90 organizing protein 3-like 370 484 - -
Pumo4g01630 560 SMART tpr_5 439 472 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 405 438 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 307 344 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 371 404 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 36 69 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 70 103 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 232 265 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 266 299 IPR019734 GO:0005515
Pumo4g01630 560 SMART tpr_5 2 35 IPR019734 GO:0005515
Pumo4g01630 560 ProSiteProfiles TPR repeat profile. 439 472 IPR019734 GO:0005515
Pumo4g01630 560 ProSiteProfiles TPR repeat profile. 405 438 IPR019734 GO:0005515
Pumo4g01630 560 FunFam Putative stress-induced-phosphoprotein 1 122 190 - -
Pumo4g01630 560 Gene3D Tetratricopeptide repeat domain 229 365 IPR011990 GO:0005515
Pumo4g01630 560 MobiDBLite consensus disorder prediction 191 241 - -
Pumo4g01630 560 ProSiteProfiles TPR repeat profile. 232 265 IPR019734 GO:0005515
Pumo4g01630 560 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Pumo4g01630 560 SMART CBM 132 171 IPR006636 -
Pumo4g01630 560 SMART CBM 509 548 IPR006636 -
Pumo4g01630 560 MobiDBLite consensus disorder prediction 221 241 - -
Pumo4g01630 560 FunFam Stress-induced phosphoprotein 1 229 363 - -
Pumo4g01630 560 Gene3D - 122 190 - -
Pumo4g01630 560 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Pumo4g01630 560 PANTHER TPR REPEAT CONTAINING PROTEIN 2 532 - -
Pumo4g01630 560 Pfam Tetratricopeptide repeat 440 472 IPR001440 GO:0005515
Pumo4g01630 560 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Pumo4g01630 560 Gene3D Tetratricopeptide repeat domain 369 484 IPR011990 GO:0005515
Pumo4g01630 560 FunFam Stress-induced phosphoprotein 1 1 116 - -
Pumo4g01630 560 Gene3D - 490 560 - -
Pumo4g01630 560 Pfam Tetratricopeptide repeat 7 68 - -
Pumo4g01630 560 Pfam Tetratricopeptide repeat 76 121 - -
Pumo4g01630 560 ProSiteProfiles TPR repeat profile. 371 404 IPR019734 GO:0005515
Pumo4g01630 560 SUPERFAMILY TPR-like 8 479 IPR011990 GO:0005515
Pumo4g01630 560 MobiDBLite consensus disorder prediction 196 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01630 Pumo-Chr4 20548854 20553212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01630 1 99 U-box Gene Family AT3G07370 30.303 2.12e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01630 K09553 - gmx:547932 978.008