Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01621 ATGGGTTCTCAACAGAACAATGGCACGAGCTACCCACCTTCGGAGCCGAAACCGTGCGCCAACAACTGCGGTTTCTTCGGCACTTCCGAGAACCGAAACCTCTGCTCCAAATGCTACAAGGACCTCTGTCTCCAAGAGGAGCTTGCCGCAATGAAGTCCGTGTCCTGCTCCGCCACGCCGCCGGGCACGGTTGGACCGTCGAAACCGGCGAACCGGTGTGTGGCCTGCAACAAAAAAGTGGGTTTAACTGGTTTTGTGTGCAAGTGTGGGAGTACCTTCTGTGGGGTGCATCGTTACCCGGAGAAGCACCAGTGTTCCTACGATTTTAAGGCTGCGGGGCGCGAAGCAATTTCGAAGGCAAATCCTGTTGTTAAGGGTGACAAGTTCAAAAGGTTTTAG 399 0.5439 MGSQQNNGTSYPPSEPKPCANNCGFFGTSENRNLCSKCYKDLCLQEELAAMKSVSCSATPPGTVGPSKPANRCVACNKKVGLTGFVCKCGSTFCGVHRYPEKHQCSYDFKAAGREAISKANPVVKGDKFKRF 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01621 132 Gene3D - 63 119 IPR035896 -
Pumo4g01621 132 Pfam AN1-like Zinc finger 75 109 IPR000058 GO:0008270
Pumo4g01621 132 SMART AN1_Zf_4 73 110 IPR000058 GO:0008270
Pumo4g01621 132 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Pumo4g01621 132 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Pumo4g01621 132 SUPERFAMILY AN1-like Zinc finger 63 127 IPR035896 -
Pumo4g01621 132 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Pumo4g01621 132 Gene3D - 1 62 - -
Pumo4g01621 132 ProSiteProfiles Zinc finger AN1-type profile. 67 113 IPR000058 GO:0008270
Pumo4g01621 132 FunFam Zinc finger AN1-type containing 6 48 128 - -
Pumo4g01621 132 PANTHER AN1-TYPE ZINC FINGER PROTEIN 16 131 - -
Pumo4g01621 132 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 19 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01621 Pumo-Chr4 20457887 20458285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01621 13 132 C2H2 Transcription Factor Family AT3G52800 39.130 8.52e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01621 - - gmx:100807386 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01621 4 20457887 20458285 Pumo4g01621 4 20457887 20458285 ECH