Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01620 ATGCAGCTCTTTCATTTCAAAATGGAAACAATACACATATGGTTGACTCATCAAAGTCATCTATTGTTCGGATCGGAAAGGGGAGTTGGTTATGTAGATCTTGCTGGTTCAGAGCGAATTGATAAGTCAGGAAGTGAAGGACATTACCTGAAGGAAGCCAGATCTATCAAAATTGTACTTGAGTGCAATGCAGCAATGGGAAAGTGTATTAATGCACTTGCAGAAAATAGTGTCCATGCGCCGTTTGGTGAATCAAAACTCACTAGATTACTTCGTGATTCATTTGGAGGTACAGCAAGAACATCACTGGTCAAGACTATTGGACCTTATCCACGGCATAGGGGAGAGTCTGCCAGCATTCAAACACCGCAAGCTATGAAGGTGGAAAGCATGGTAAAAGTGAAGGAGGAAATTGATTACAAAAGTTTATGTAGAAGGCTAGACAGAGAATTGGACAAACTCACTATGGAATATGAAAGGCAGCAGAAGGTATTTGAGGATGATATTGAAAGATTGACCACAGAAGCACAACTTCGGATATCAGAGGCCCAACAGAATTATTCGGATTCATTGGAGAAGGAAAGATTGAAATATCAGGAAGACTATAAAGAATCAATTAAGAGGCTTGAAGAGAAGGTGATGGAGAATAAAAAAAAGTATGAGGAATTTTGTATGACATCTACTAGAGAGATGGCTTTTGTGCCTGCTGAGGAAGTATACATTTTGAAAAAAATACTTCAGAGAGAGACCCTTTTAAGAAATGCTGCTGAAGGGGAGATAAATCATCTGAAAAATCAAATGGCAGAACTGAAAATGTCGGAGGCATCAAGAGAATCAGATATCTTAAAACTTCGAAAGATGTTGGAAGATGAGGCACAGCAGAAGGAGAAACTTAAAGGAGAAATAGCAAGATTGCAAAGTCAATTGTTGCAATTAGGTTTTGAAGTTGGCAAGAAAAAACAACAAATTGTTGGAGGTGGATTTGAAAAAGATGCTGGTGGTCTAGATTCTCCCACTTCCCTAGTTAAGCATCAACAGCAAGCTTCCGGAAATGGAGAGAAGGCCTCAGTTGCCAAGCTCTTTGAACAAGGGGGATTGCAGAAGATTCTGTCATTGCTTGAAGCAGAAGATACTGATGCGCGAATCCATGCCGTGAAAATAGTAGCAAATTTATCTTCTGAAGAAACAAATCAGAAGAAGATTGTAGAAGCAGGTGGACTTACGTCTCTGCTTACACTGCTTAAGAACTCACAAGACGAAACCACACAGAGAGCTGCAGCAAGCGCCATAGCAAATTTGGCCATGAATGAAACCAATCAAGATCTCATTGTGGCCCAAGGAGGCATTCATTTACTATCAATGAAAGCAGCCAATGCCGAAGATCCTCAGACCCTTCGAATGGTTGCTGGAGCAATTGCTAATCTTTGCGGCAATGATAAACTACAAATAAAACTAAGAGAAGAAGGTGGTATCAAGGCACTGCTGGGAATGGTCAGATGCAGACATCCTGATGTACATACCCAGATTGCCCGCGGAATAGCCAACTTTGCCAAGTGCGAGTCTAAAGCATCTACTCAAGGGACAAAGGTTGGAAGGTCTTTACTACTTATTGAGGATGGTGTGCTTCCATGGATAGTGCAAAACGCAAACAATGAAGTCTCGTTAGTTAGGCGTCATATTGAGCTTGCACTCTGTCATTTAGCACAACATGAAGCAAATGCAAGAGACATGATTAGTGGAGGTGCAATAGGAGAGTTGGTTCGTATTTCGAGAGATTGTTCAAGAGAAGACATACGGATTCTTGCACGTACAACACTAATCTCCAGCCCCGTTTTCCAAGCTGAAATTAGGCGTTTGGGGATAGATTATTGA 1872 0.4113 MQLFHFKMETIHIWLTHQSHLLFGSERGVGYVDLAGSERIDKSGSEGHYLKEARSIKIVLECNAAMGKCINALAENSVHAPFGESKLTRLLRDSFGGTARTSLVKTIGPYPRHRGESASIQTPQAMKVESMVKVKEEIDYKSLCRRLDRELDKLTMEYERQQKVFEDDIERLTTEAQLRISEAQQNYSDSLEKERLKYQEDYKESIKRLEEKVMENKKKYEEFCMTSTREMAFVPAEEVYILKKILQRETLLRNAAEGEINHLKNQMAELKMSEASRESDILKLRKMLEDEAQQKEKLKGEIARLQSQLLQLGFEVGKKKQQIVGGGFEKDAGGLDSPTSLVKHQQQASGNGEKASVAKLFEQGGLQKILSLLEAEDTDARIHAVKIVANLSSEETNQKKIVEAGGLTSLLTLLKNSQDETTQRAAASAIANLAMNETNQDLIVAQGGIHLLSMKAANAEDPQTLRMVAGAIANLCGNDKLQIKLREEGGIKALLGMVRCRHPDVHTQIARGIANFAKCESKASTQGTKVGRSLLLIEDGVLPWIVQNANNEVSLVRRHIELALCHLAQHEANARDMISGGAIGELVRISRDCSREDIRILARTTLISSPVFQAEIRRLGIDY 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01620 623 Gene3D - 339 454 IPR011989 -
Pumo4g01620 623 ProSiteProfiles Kinesin motor domain profile. 1 135 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Pumo4g01620 623 Coils Coil 281 315 - -
Pumo4g01620 623 Pfam Kinesin motor domain 32 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Pumo4g01620 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Pumo4g01620 623 Coils Coil 246 273 - -
Pumo4g01620 623 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 448 IPR000225 GO:0005515
Pumo4g01620 623 Coils Coil 199 219 - -
Pumo4g01620 623 PANTHER VACUOLAR PROTEIN 8 347 618 IPR045156 GO:0043495|GO:0071562
Pumo4g01620 623 PRINTS Kinesin heavy chain signature 28 46 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Pumo4g01620 623 PRINTS Kinesin heavy chain signature 80 101 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Pumo4g01620 623 SUPERFAMILY ARM repeat 356 602 IPR016024 -
Pumo4g01620 623 Gene3D - 455 609 IPR011989 -
Pumo4g01620 623 SMART arm_5 478 518 IPR000225 GO:0005515
Pumo4g01620 623 SMART arm_5 436 477 IPR000225 GO:0005515
Pumo4g01620 623 SMART arm_5 353 393 IPR000225 GO:0005515
Pumo4g01620 623 SMART arm_5 394 435 IPR000225 GO:0005515
Pumo4g01620 623 Pfam Armadillo/beta-catenin-like repeat 397 434 IPR000225 GO:0005515
Pumo4g01620 623 Coils Coil 144 175 - -
Pumo4g01620 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 165 IPR027417 -
Pumo4g01620 623 Gene3D Kinesin motor domain 16 172 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01620 Pumo-Chr4 20437577 20444538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01620 27 109 Calmodulin-binding Proteins AT5G65930 47.619 8.39e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01620 - - gmx:100804612 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01620 4 20437577 20444538 Pumo4g01620 4 20437577 20444538 ECH