Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01619 ATGGATCCAATCTCAGCACATGGTCATTCCCTTCCCCCTCCTTTTCACACAAGAGATCTCCACCTGCACCACCAGCCGCAACAGCACCAGTTCCAAACCTTAAACCAAACCACCGAGGACGAGACCAGCGGCAGCAGCGGCGGGCAGAAGAGGGAACGCGAAGAAAACAACAACAACAACAACGAAGGTGGAGGTGAGGCCGAGATAACAAGAAGACCTCGAGGAAGACCAGCCGGGTCGAAAAACAAGCCGAAGCCACCCATCATCATCACTCGCGACAGCGCGAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGGTGCGACATCGTGGAAAGCGTGTCCGAGTTCGCGAGGAAACGCCAGAGAGGGGTTTGCATCATGAGTGGCACTGGAACGGTCACTAATGTGACTCTCAGGCAACCGGCTTCTTCTGGTGCGGTTGTGACTCTTCACGGAAGGTTTGAGATCTTGTCCCTCTCGGGATCGTTCCTTCCACCACCTGCGCCACCGGCCGCTTCTGGTTTGACCATTTATCTGGCCGGTGGCCAGGGTCAGGTGGTGGGAGGAAGTGTTGTTGGAACACTGGTCGCTTCGGGGCCTGTGGTGATCATGGCTGCTTCCTTTAGCAACGCTGCTTATGAGAGGCTTCCTTTGGAGGATGAGGACCCTTCGCTGCAAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGGTGTTGGTCAGTCACAGCTTCTAGGAGGGGATGCAACTGCTCCACTTTTCCATGGTTTGCCTCCTAACCTTCTCAATTCTGTTCAAATGCCATCTGAGCCATTCTGGGCATCTGCTCGCCCACCGCATTTCTGA 855 0.5532 MDPISAHGHSLPPPFHTRDLHLHHQPQQHQFQTLNQTTEDETSGSSGGQKREREENNNNNNEGGGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGCDIVESVSEFARKRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSLQMQGGSIGSPGASGVGQSQLLGGDATAPLFHGLPPNLLNSVQMPSEPFWASARPPHF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01619 284 MobiDBLite consensus disorder prediction 26 44 - -
Pumo4g01619 284 MobiDBLite consensus disorder prediction 1 90 - -
Pumo4g01619 284 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Pumo4g01619 284 MobiDBLite consensus disorder prediction 45 59 - -
Pumo4g01619 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Pumo4g01619 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 266 IPR014476 GO:0003680
Pumo4g01619 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Pumo4g01619 284 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Pumo4g01619 284 CDD DUF296 99 210 IPR005175 -
Pumo4g01619 284 PIRSF ESCAROLA 15 283 IPR014476 GO:0003680
Pumo4g01619 284 Gene3D - 98 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01619 Pumo-Chr4 20431173 20432936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01619 1 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 55.357 2.85e-84 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01619 - - gmx:100807581 476.478