Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01613 ATGGAGGCCAGTGGCGGTGTTAGCGGCGGCGTTACGGTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCGGCCGGCGGATCCAGGACGCAGATTCCGGCGACGACGGGGAGTGCTCCGCCGCCGCCACATCCGCCGCACACGGCGGCGATGGAGGCTTCGCCGGCGACGATGCCGGCGAAGAAGAAGAGGGGCCGGCCGAGAAAATACGCACCTGACGGGTCAGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACTAGCTCCGTGAGCAAAGCCAAATTTGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCTATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACATTGACATATGAGGGACGGTTTGAGATTCTGTCTTTATCTGGCTCATTCATGCCCAATGAAAGTGGAGGAACACGAAGCAGATCAGGTGGCATGAGTGTATCTTTGGCCAGCCCTGATGGACGAGTTGTAGGTGGGGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAGAAAACAGAAACATGAGGTTATATCAAGTGTGACACCAGCTGCAGTTATTCCAATCTCTACCCTTGATCCAGTACCAATTCTATCAGCAGTGTCTTCCATTCGCGGCGAAAATTGGTCTGCAATGCCGGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTAA 984 0.5335 MEASGGVSGGVTVVGSDAPSDYHVAPRTDNPAPAGGSRTQIPATTGSAPPPPHPPHTAAMEASPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQKHEVISSVTPAAVIPISTLDPVPILSAVSSIRGENWSAMPAEAKNKPADINVSLPAG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01613 327 Gene3D - 144 276 - -
Pumo4g01613 327 ProSiteProfiles PPC domain profile profile. 139 281 IPR005175 -
Pumo4g01613 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 141 260 - -
Pumo4g01613 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 281 IPR039605 GO:0003680
Pumo4g01613 327 MobiDBLite consensus disorder prediction 1 118 - -
Pumo4g01613 327 CDD DUF296 143 234 IPR005175 -
Pumo4g01613 327 FunFam AT-hook motif nuclear-localized protein 1-like 144 274 - -
Pumo4g01613 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01613 Pumo-Chr4 20369272 20374713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01613 1 324 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 61.864 4.76e-131 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01613 - - gmx:100801730 570.852