Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01589 ATGGGAAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGCGCTGTGCCAAAGCTTGCTGGCCTTAGGCGTTGTGGCAAGAGTTGTCGCCTTCGTTGGACTAATTATCTTCGCCCAGACTTGAAGAGAGGGCTCCTCACAGAAGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACCCATATCAAGAAAAAACTCCTTAAGATGGGTATTGATCCCGTTACTCATGAACCTCTCAATAAACAAGCAGCATCTCAGGATAGTTCATCCTCCCCTGCAGAGCATTTGCCACAACCTGGCAATAACGTTGATCAGGTCAAGGAAACTGATGGGGTTCTTCTCAACTCAGAGGAGAATTCAAGTTCATCACAAGCTGAAAATTCTTCTGGGGATGATTCACTTTTGCTAGATAGCATTTGCAGTGATGACTCTCTATTAAACAGCATGTGGCTGGATGAAACTCCTCTGGTGGAAGCGTTATGGGACACAACACCTAAACTAGAGAATACTAATAATAATAACATGGGTTTGTTGCCATCTTGGGAGGATAATTGTGCTTGGTTATTGGACTGTCAGGACTTTGGTATTCATGATTTTGGGTTTAACTGTTTCAACGAGATAGAGTCAAATGCACTGCAAACTATAGGAATGAAGGAAGAGGGGCATTAG 819 0.4493 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASQDSSSSPAEHLPQPGNNVDQVKETDGVLLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNSMWLDETPLVEALWDTTPKLENTNNNNMGLLPSWEDNCAWLLDCQDFGIHDFGFNCFNEIESNALQTIGMKEEGH 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01589 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo4g01589 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g01589 272 CDD SANT 16 61 IPR001005 -
Pumo4g01589 272 Gene3D - 12 67 - -
Pumo4g01589 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g01589 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 188 - -
Pumo4g01589 272 FunFam MYB transcription factor 11 67 - -
Pumo4g01589 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo4g01589 272 MobiDBLite consensus disorder prediction 130 155 - -
Pumo4g01589 272 FunFam MYB transcription factor 70 146 - -
Pumo4g01589 272 Gene3D - 71 145 - -
Pumo4g01589 272 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Pumo4g01589 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g01589 272 CDD SANT 71 112 IPR001005 -
Pumo4g01589 272 SMART sant 13 63 IPR001005 -
Pumo4g01589 272 SMART sant 66 114 IPR001005 -
Pumo4g01589 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01589 Pumo-Chr4 20126926 20129160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01589 1 264 MYB Transcription Factor Family AT4G12350 56.098 1.53e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g01589 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01589 K09422 - gmx:100786965 498.049