Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01580 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAATGAGACGAGTAGGCAAGTAACCTTCTCGAAGAGAAGGAACGGGTTGCTGAAGAAGGCCTTTGAGCTTTCAGTGCTGTGCGATGCTGAAGTCGCACTCATCATCTTCTCCACCAGAGGGAGGCTTTATGAGTTCTCCAGTTTAAGATGCTCCAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAGATGAAGGACCTGGGTGTCAGCAACAAAGGAATCCATGAAAATATACAGCATCTGAAGGAAGGTGATATAAGCATGGCAAAGAAGATCGAGCACCTAGAAGATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATAAATGCAGTATTGACGAGTTACAACAGCTAGAGAACCAACTCGAACGCAGCTTGGACAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGGTGCGAATCGAGAAGCTAAAAGAAGAGGAAAAGTGCTTACTCGAAGTAAATAAACGCTTACGCGAGCAGTATCAGATTGAACGACAGCGTTCTTTGAGTGATCAGGATGTGGAACACGTCACAGAAAAGGGGGGAGAAGAGGTGGAGACGGAGTTATTCATAGGGAGACCTGAGAGACGAATGCCGTTAAAGTTGAAGCCTGCAACACATTGTGCTCATACTACATACCCTAATCTAAAGATTAACAATTAA 702 0.4387 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSLRCSSINKTVERYQRKMKDLGVSNKGIHENIQHLKEGDISMAKKIEHLEDSRRKLLGDELDKCSIDELQQLENQLERSLDKIRARKNQLFRVRIEKLKEEEKCLLEVNKRLREQYQIERQRSLSDQDVEHVTEKGGEEVETELFIGRPERRMPLKLKPATHCAHTTYPNLKINN 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01580 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Pumo4g01580 233 Pfam K-box region 91 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo4g01580 233 Coils Coil 153 173 - -
Pumo4g01580 233 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Pumo4g01580 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo4g01580 233 FunFam Agamous-like MADS-box protein AGL13 13 82 - -
Pumo4g01580 233 ProSiteProfiles K-box domain profile. 90 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo4g01580 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo4g01580 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pumo4g01580 233 Coils Coil 124 147 - -
Pumo4g01580 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo4g01580 233 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Pumo4g01580 233 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Pumo4g01580 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo4g01580 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo4g01580 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01580 Pumo-Chr4 19996798 20007664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01580 1 217 MADS-box Gene Family AT4G22950 57.919 2.97e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo4g01580 K-box 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01580 - - gmx:100805260 377.867