Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01579 ATGCAAGAAGCAGGGTTGGGAATGGGAATGGGAATGATGAGCGGCGGCGACCACCGTCAAGTGAAGGCGGAGATAGCCAGCCACCCACTCTATGAACAGCTTCTGGCTGCACACGTGTCGTGCCTCCGCGTAGCCACACCCATCGATCAGTTGCCACTCATCGACGCTCAGTTATCGCACTCCCACCATCTCCTCCGCTCTTATGCAGCCTCACACCATTCCCATTCCCTCTCACCTCATGACCGACAAGAACTTGACAACTTCATGGCACAATATTTGATTGTGTTGTGTACGTTCAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTGACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCCACAATGTCAGATGATGAAGATGATTTGCAGATGGATGGCTCTTTGGACCAGTCTAGCGCCGAGGGGCATGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAACTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTCAGGGAGGAAATATTAAGGAAGCGGAGAGCTGGGAAATTACCAGGTGACACAACATCGGTTTTAAAGGCCTGGTGGCAGCAACATGCTAAGTGGCCTTATCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTCTGAAGTCCAAGCGCAAGAGGTATAGAGAGATTTAG 864 0.4942 MQEAGLGMGMGMMSGGDHRQVKAEIASHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSHSHHLLRSYAASHHSHSLSPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLQMDGSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRYREI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01579 287 Gene3D - 205 280 - -
Pumo4g01579 287 Pfam KNOX2 domain 78 129 IPR005541 GO:0003677|GO:0005634
Pumo4g01579 287 SMART KNOX1_2 19 63 IPR005540 GO:0003677|GO:0005634
Pumo4g01579 287 Pfam KNOX1 domain 21 62 IPR005540 GO:0003677|GO:0005634
Pumo4g01579 287 SUPERFAMILY Homeodomain-like 208 273 IPR009057 -
Pumo4g01579 287 SMART HOX_1 208 273 IPR001356 GO:0003677
Pumo4g01579 287 FunFam homeobox protein knotted-1-like 3 isoform X1 207 268 - -
Pumo4g01579 287 ProSiteProfiles ELK domain profile. 186 206 IPR005539 GO:0003677
Pumo4g01579 287 SMART KNOX2_2 75 130 IPR005541 GO:0003677|GO:0005634
Pumo4g01579 287 ProSiteProfiles 'Homeobox' domain profile. 206 269 IPR001356 GO:0003677
Pumo4g01579 287 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 270 - -
Pumo4g01579 287 Pfam Homeobox KN domain 226 265 IPR008422 GO:0003677|GO:0006355
Pumo4g01579 287 CDD homeodomain 209 270 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01579 Pumo-Chr4 19971932 19977455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01579 1 282 Homeobox Transcription Factor Family AT1G62990 77.551 5.87e-168 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo4g01579 KNOX2 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01579 - - gmx:100782179 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01579 4 19971932 19977455 Pumo4g01579 4 19971932 19977455 ECH
Pumo4g01579 4 19971932 19977455 Pumo8g02266 8 59799013 59805357 PCT