Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01577 ATGGCGTCGAATCACGAGATGGATCAAGACGACGACGGAGGAACAACGGACCTCAGCACCAGCGACACAGACAAAGACAAAGACAAAGACCCATCCGAAACCACCACCACCAACCTCAATGGACTCCCCAAACAAACCTTCCAAGTCTTGCCGCTGAAAAAGGAGGAGCCAGTCGATTCGGACCCTGACCCGGACCCGAACATGGGGATTGTTCCGGTGGCGGCGATGCAGGTGCCGGTCAAACCGGCAAGGCGCTCCTCCACCAAGGACCGCCACACGAAAGTGGAAGGCCGCGGCCGCAGGATCCGAATACCCGCCACCTGCGCCGCCCGGATCTTCCAGCTGACCCGAGAGCTCGGCCACAAGTCCGACGGCGAAACCGTCCGGTGGCTCCTGGAGCACGCCGAGCAGGCCATCATCGAGGCCACCGGCACCGGCACAGTTCCGGCCATCGCGGTGTCCGTCGGCGGCACGCTCAAAATCCCAACCACGTCGTCCAACTCCCACAACCAGGGCGAGGAAGCCTCCAACAAGAAGCGGAAACGCCCCTCCAACAGCGAGTTCGTGGACATAAACGACACCGTTTCGCAGTCGTCGGGTCTGGCCCCGGTTCAAGTCCCGCAGGGCCTGATCCCGGTCTGGGCCGTTGGTAACCCCAGCATGGTGGTCCCCGCTAACACCTTCTGGATGATCCCGCAGGCCGCGACCACACCCAACCCCTTGGGCGGAATAACGGGCCCCGCAAACCAGCAGCAGCCTCAGCCTCAGCCTCAGATATGGGCCTTATCCCCCTCCGTGTTCAACGTCGCGCCCAGGCCCATATCGCCTCTCGTCACCACGAATAATATTCCAGAAGCTTGGCCCGTTATGGCGGCCTGCAGTAACGGTTCTACCTCAGCGGTGAGCACGAGCACGGTGGGGGCTAAGGTGGCAACCAAATCCAGCATGGCACCTAGTGTTAGTTCCAGCGGTAGTAGTGGCAAGACTCAGATTTTAAGGGATTTTTCGCTCCAAATTTACGATAAGCAAGAGTTGCAGTTCTTGGGCCGCTCTGGGACTCACGCGCAGAGTTAG 1074 0.6043 MASNHEMDQDDDGGTTDLSTSDTDKDKDKDPSETTTTNLNGLPKQTFQVLPLKKEEPVDSDPDPDPNMGIVPVAAMQVPVKPARRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTTSSNSHNQGEEASNKKRKRPSNSEFVDINDTVSQSSGLAPVQVPQGLIPVWAVGNPSMVVPANTFWMIPQAATTPNPLGGITGPANQQQPQPQPQIWALSPSVFNVAPRPISPLVTTNNIPEAWPVMAACSNGSTSAVSTSTVGAKVATKSSMAPSVSSSGSSGKTQILRDFSLQIYDKQELQFLGRSGTHAQS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01577 357 MobiDBLite consensus disorder prediction 160 185 - -
Pumo4g01577 357 Pfam TCP family transcription factor 87 181 IPR017887 -
Pumo4g01577 357 MobiDBLite consensus disorder prediction 1 33 - -
Pumo4g01577 357 ProSiteProfiles TCP domain profile. 88 142 IPR017887 -
Pumo4g01577 357 MobiDBLite consensus disorder prediction 1 67 - -
Pumo4g01577 357 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 343 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01577 Pumo-Chr4 19913042 19914581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01577 27 354 TCP Transcription Factor Family AT2G45680 44.658 1.65e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo4g01577 TCP 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01577 - - gmx:100781096 454.136