Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01571 ATGAATATTCTCGGACAATCATTCGACGAATCAAAAAACGGCTGCTACTCTTGTTCCTCGCTGGAGACTGCAAGCTCCTCTAACCTTCCCAACACTGTTCACTCCGACGAGGAAATTCACACATTAGCGTCGGCGCATCCTAAGAAACGTGCGGGGCGTCGAATTTTTAAGGAGACAAGACACCCCGTGTACCGAGGAGTGCGACGGAGGAACAACAACAAGTGGGTCTGCGAGGTGCGTGTTCCCAACGACAAGTCCACCAGAATTTGGCTTGGAACGTATCAAACTCCTGAAATGGCCGCACGTGCGCACGACGTCGCTGCGCTAGCGCTTCGAGGCAAGTCGGCGTGTCTCAACTTCGCTGACTCGGCGTGGCGGCTGCCCTTGCCGGCGTCGACCAATGCGAAGGAGATTCGGCGCGTGGCGGCCGCGGCTGCTGTGGCGATTGCGGCGGAAGACAGCGAGCAGTTACAGAATGTGAACGCCGTTGCTGATTGCGAAGTTAGCAGCAGTGACGTCAGCGCTGATGAAGATTCCAATAACGATAAAGCTTCACAGAGTATTTGTGATTTGGATGAAATTACAATGCCAGATGCACCGGTTTTTGAGGACATGCACGAGTGGCTTCAGAGTATGGCTGATGAACCGTTAAGATCGCCTACTTTTGTAACATATGTTAATGTTAGGGACTGCTGGAACTTTGTGGAGGATGATGCTGAGGTGTCCTTGTGGAGCTTCACCATCTGA 747 0.5248 MNILGQSFDESKNGCYSCSSLETASSSNLPNTVHSDEEIHTLASAHPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYQTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAAAAAVAIAAEDSEQLQNVNAVADCEVSSSDVSADEDSNNDKASQSICDLDEITMPDAPVFEDMHEWLQSMADEPLRSPTFVTYVNVRDCWNFVEDDAEVSLWSFTI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01571 248 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Pumo4g01571 248 SUPERFAMILY DNA-binding domain 63 123 IPR016177 GO:0003677
Pumo4g01571 248 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Pumo4g01571 248 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Pumo4g01571 248 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Pumo4g01571 248 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Pumo4g01571 248 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Pumo4g01571 248 FunFam Ethylene-responsive transcription factor 2 62 122 - -
Pumo4g01571 248 Pfam AP2 domain 62 113 IPR001471 GO:0003700|GO:0006355
Pumo4g01571 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 245 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01571 Pumo-Chr4 19836594 19837790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01571 42 246 AP2-EREBP Transcription Factor Family AT4G25470 49.038 6.17e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g01571 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01571 - - gmx:100795696 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01571 4 19836594 19837790 Pumo4g01571 4 19836594 19837790 ECH
Pumo4g01571 4 19836594 19837790 Pumo8g02275 8 59971859 59973037 PCT