Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo4g01570 | ATGGCATCATCATCATCATCATCATCGAAGAGGCATCCAGTGTATCATGGAATCCGTTGCCGTGGAGGAAAATGGGTTACTGAAATCCGCGAACCGCGTAAAACAAACCGCATATGGCTGGGGACGTTCCTGACGCCAGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGGCCCTGAAAGGCGGCGAAGCTGTTCTTAACTTCCCTGACTCGGTTGGCAAGTATCCGGTGCCCACGTCCAAATCCCCTGCGGACATCCGCACCGCTGCCATTGCTGCAGCCGAACTCATGAAGCCTGAAGCCAGCCACAACAACGTTAATGCATCAACAACTAATGCATCAGTTCAATCTGATAACACTAATGTTTTTCCTTCGTTTGAAACTGAATTTATGGACGAGGAAGCCATATTCTCCATGCCAAGTTTGCTGGTCGACATGGCTGGGGGAATGTTGCTATCTCCTCCCAGAATGAGCCCTCCCTCCGATGACTCAACCGAAAGTTATGTTGGAGAAACTTTGTGGAACTTTTGA | 534 | 0.5112 | MASSSSSSSKRHPVYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVGKYPVPTSKSPADIRTAAIAAAELMKPEASHNNVNASTTNASVQSDNTNVFPSFETEFMDEEAIFSMPSLLVDMAGGMLLSPPRMSPPSDDSTESYVGETLWNF | 177 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo4g01570 | 177 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 8 | 176 | IPR045277 | GO:0003700 | |
Pumo4g01570 | 177 | SUPERFAMILY | DNA-binding domain | 14 | 72 | IPR016177 | GO:0003677 | |
Pumo4g01570 | 177 | CDD | AP2 | 15 | 72 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g01570 | 177 | SMART | rav1_2 | 14 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g01570 | 177 | Gene3D | AP2/ERF domain | 14 | 71 | IPR036955 | GO:0003700|GO:0006355 | |
Pumo4g01570 | 177 | ProSiteProfiles | AP2/ERF domain profile. | 14 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Pumo4g01570 | 177 | Pfam | AP2 domain | 13 | 62 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo4g01570 | Pumo-Chr4 | 19808790 | 19810286 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo4g01570 | 1 | 177 | AP2-EREBP Transcription Factor Family | AT2G36450 | 50.000 | 1.66e-46 | 149 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Pumo4g01570 | AP2 | 1e-08 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo4g01570 | - | - | gmx:100793589 | 295.049 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo4g01570 | 4 | 19808790 | 19810286 | Pumo4g01570 | 4 | 19808790 | 19810286 | ECH | |
Pumo4g01570 | 4 | 19808790 | 19810286 | Pumo8g02277 | 8 | 60004998 | 60005706 | PCT |