Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01570 ATGGCATCATCATCATCATCATCATCGAAGAGGCATCCAGTGTATCATGGAATCCGTTGCCGTGGAGGAAAATGGGTTACTGAAATCCGCGAACCGCGTAAAACAAACCGCATATGGCTGGGGACGTTCCTGACGCCAGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGGCCCTGAAAGGCGGCGAAGCTGTTCTTAACTTCCCTGACTCGGTTGGCAAGTATCCGGTGCCCACGTCCAAATCCCCTGCGGACATCCGCACCGCTGCCATTGCTGCAGCCGAACTCATGAAGCCTGAAGCCAGCCACAACAACGTTAATGCATCAACAACTAATGCATCAGTTCAATCTGATAACACTAATGTTTTTCCTTCGTTTGAAACTGAATTTATGGACGAGGAAGCCATATTCTCCATGCCAAGTTTGCTGGTCGACATGGCTGGGGGAATGTTGCTATCTCCTCCCAGAATGAGCCCTCCCTCCGATGACTCAACCGAAAGTTATGTTGGAGAAACTTTGTGGAACTTTTGA 534 0.5112 MASSSSSSSKRHPVYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSVGKYPVPTSKSPADIRTAAIAAAELMKPEASHNNVNASTTNASVQSDNTNVFPSFETEFMDEEAIFSMPSLLVDMAGGMLLSPPRMSPPSDDSTESYVGETLWNF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01570 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 176 IPR045277 GO:0003700
Pumo4g01570 177 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Pumo4g01570 177 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Pumo4g01570 177 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Pumo4g01570 177 Gene3D AP2/ERF domain 14 71 IPR036955 GO:0003700|GO:0006355
Pumo4g01570 177 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Pumo4g01570 177 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01570 Pumo-Chr4 19808790 19810286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01570 1 177 AP2-EREBP Transcription Factor Family AT2G36450 50.000 1.66e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo4g01570 AP2 1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01570 - - gmx:100793589 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01570 4 19808790 19810286 Pumo4g01570 4 19808790 19810286 ECH
Pumo4g01570 4 19808790 19810286 Pumo8g02277 8 60004998 60005706 PCT