Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01560 ATGACATCGTCATCATCAAGCAACGCCTACGACGTGCCGTGGGTAGAGAAGTACCGTCCCAACAAGGTCGCCGACATCGTCGGCAACGAGGACGCCGTCTCCAGACTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGAACCGGAAAAACCACTAGCATACTCGCCCTCGCGCACGAGCTTCTCGGAGGACCCAATTGCAAGGAAGCCGTTCTCGAACTAAACGCATCCGATGATAGAGGAATTGATGTCGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTGACGCTGGCCCCGGGGAGGCACAAGATAGTAATACTGGATGAAGCTGATAGCATGACCACAGGGGCACAGCAAGCATTGAGAAGGACAATGGAGATATATTCGAACACTACTCGGTTTGCTCTTGCTTGCAATACCTCAGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTACGCGATTGTCTGATCAAGAGATACTTGGTCGTCTAATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTACGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGACAGGCATTGAATAACTTGCAAGCAACCTACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTGTGTGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAATTTTGATGAAGCGTGTTCTGGCCTCAAGCAACTGTATGACTTGGGATATTCCCCCACGGATATCATCACGACACTTTTTCGTATAATAAAAAATTATGACATGGCTGAATACCTGAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGTTGTGTGGTCTATTGGCTAAGCTTTCTCTTGTTCGTGAGACAGCTAAAGCTGTATGA 996 0.4649 MTSSSSSNAYDVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLAPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFTRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01560 331 FunFam replication factor C subunit 2 235 327 - -
Pumo4g01560 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 232 IPR027417 -
Pumo4g01560 331 Gene3D - 171 234 - -
Pumo4g01560 331 CDD HLD_clamp_RFC 170 232 - -
Pumo4g01560 331 FunFam Replication factor C subunit 4 6 170 - -
Pumo4g01560 331 Gene3D - 5 170 IPR027417 -
Pumo4g01560 331 CDD AAA 27 165 - -
Pumo4g01560 331 FunFam Replication factor C subunit 4 171 234 - -
Pumo4g01560 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Pumo4g01560 331 SMART AAA_5 44 171 IPR003593 GO:0016887
Pumo4g01560 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677|GO:0006260
Pumo4g01560 331 Pfam ATPase family associated with various cellular activities (AAA) 48 167 IPR003959 GO:0005524|GO:0016887
Pumo4g01560 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 13 315 - -
Pumo4g01560 331 Gene3D - 235 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01560 Pumo-Chr4 19680126 19683618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01560 8 330 Core DNA Replication Machinery Family AT1G63160 91.022 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01560 K10755 - gmx:100781364 649.047