Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01559 ATGGCGACGACAAGGTCACCCAACCGTTCTTCCGAGGACGCCGCCGATCCCACGCCGTTCCTCGGGACTTCCTCCGACGACTCCACCTCCGGCCGCCGCCTCCTCCGCCGCCCCAGCCTCCGCGAGGCCGCGCGCTTCCTGCGCCAGGCCAGCGGCCGGCGGCTGATGCGCGAGCCGTCGATGGTGGTGCGGGAGGCGGCGGCGGAGCAACTCGAAGAGACGCAGAGCGACTGGGCCTATTCCAAGCCGGTCGTCGTTTTGGACATTCTCTGGAACTTCGCTTTCGTCGCCGCCGCCGCCACCATCTTTGTTCTCAGTCGCAACGAGAATCCGAACATGCCTCTCAGGTTGTGGATTGTAGGCTACGCGCTGCAGTGCGTTCTTCACGTCGCGTGCGTCTGCGTCGAGTATCGGCGGCGCCAGCGCCGCCGTGAACAGTCCAACGCTGCCGCCGTTGGCGGCAGCGGGGATTTGAGTCCGTCTTCGATGGACGGCTCTGGACACTACGTGTCGTTGGCGCAGTTCGACGACGATGGTATAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCGTTTATTTGGTGGGTTGTTGGATTCTATTGGGTATCAGCTGATAGTGAAGCTTTGGTCCGAGATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTAGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAGTTCCAGAGAACTGAAACTAATGAGAAACTTAATACACAAGGAGCTGCTGGAGGAATAATGATTGAATGCGATGCTGATTCTCCCATTGAACATGTTCTTTCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGACGGGGTTGAACTTAGACAACTACCTTGTGGCCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTCTGCAAGTACAACATCTTGAAAAGTACCAGTCACGGTCAAGACGAAGTGTAG 1128 0.5363 MATTRSPNRSSEDAADPTPFLGTSSDDSTSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEETQSDWAYSKPVVVLDILWNFAFVAAAATIFVLSRNENPNMPLRLWIVGYALQCVLHVACVCVEYRRRQRRREQSNAAAVGGSGDLSPSSMDGSGHYVSLAQFDDDGISMAKHLESANTMFSFIWWVVGFYWVSADSEALVRDSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKLNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCACVDKWLHINATCPLCKYNILKSTSHGQDEV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01559 375 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Pumo4g01559 375 PANTHER TARGET OF ERK KINASE MPK-1 51 365 - -
Pumo4g01559 375 SMART ring_2 320 360 IPR001841 -
Pumo4g01559 375 MobiDBLite consensus disorder prediction 1 29 - -
Pumo4g01559 375 FunFam E3 ubiquitin-protein ligase At1g12760 306 371 - -
Pumo4g01559 375 CDD RING-H2_RNF6-like 319 361 - -
Pumo4g01559 375 MobiDBLite consensus disorder prediction 1 34 - -
Pumo4g01559 375 SUPERFAMILY RING/U-box 311 368 - -
Pumo4g01559 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 368 IPR013083 -
Pumo4g01559 375 Pfam Ring finger domain 319 361 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01559 Pumo-Chr4 19672776 19677763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01559 18 370 C3H Transcription Factor Family AT1G68070 48.883 4.16e-116 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01559 - - gmx:100779757 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01559 4 19672776 19677763 Pumo8g02287 8 60119342 60136218 PCT