Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01539 ATGGTTTGGACGAGACGCAGTGGATCTCTCTCTGCCAAAAGATCTTCCACCTCGGAAGATAAACCTCCTTCGCCGAAGCGTCAAAAGGTCGACAATGGCGGTTCGTCGGAGAAATCGGTGCCGACGCCGGCGGAGAATTCCAAGGATTTATCTACTCCGGAGCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGACGCTCAGATCGCCGGAGCGGGTGCCGCCGATGGAGTGAGCTCCGGCAAGGGTGACGCTACGCCGGCTGTGCCTGTCACGGCGCCGATTGCTGATGCCGCATGTCCGTCGTTCTCTTCGTGGATTAATTATCAGAAACAGAATCCGAATATCGAGGGTGCGCCGTGGTGCAGGTTCTTGTCGCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCACACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTCCACTGAATGATCAAACTATAAGTGGAAATTTATGCAAGATCAAACATACGCAGCATGACGGAAGTGCTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCATGTCAAGAAGAATACCAGCTGTGTACTTAACTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAAAGTGGTATTGGGAAATTTCTGCCGCTTGAAAGGAGAAGTGGAGACCCTTCAGCTGTGGCTGGGGCCTCTATTTTGGCTTCTCTTTCTAACAGACAGGACCTTACAAGATGGAAATCTCCATCTCAGACCTCCAGTAAACCTCACCAGGGTACCGATGTCTCTAGTCATTCTGTTCATCATGATTGTACAGAAAATGAGCTTGATGGCTCAGAATCAACTCCAAATGTGCGGAGTGATAAAGCAGCAGATGTTCGGACAAGTGACAAGAATTCAACAATGGATTGCGATCCAGATGCTGGTGCAGAGGCAGGCAATGTAAAAATCTCTGGGGTATTGGAAGAAAGAAATGGGATGCTGGATATGCAGGCTGCATCAACTTTGGGTACATCTGTGCGCTGTGCAGTGTTTAAAGAAGATGTTCATACTGCGATACTGGATGGAAAAGAAATAGATGTTTCTTTTGACAGCTTCCCTTACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAGGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCTGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTCGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTTAATGCTGAAAAATCCTTCAGCTGCACTAAACAAAGTCCTTCAGCAGACATGGCTAGGAGCATAGATCCATTAGCTAGCGAAACAGAGACACCTAGCCCTTCAAATGCACCTACATCATATGACTTTGAGTCTCAACCTAAGTTGGAAACTGATAACATTCCATCCACCTCTGGGACAGCTAAAAGTTGTTTGTTCAAATTAGGTGATAGGGTCAAATTTAGCTGTTCATCTTCTTGTGGTGTATATCAGACATCTCCAAGGGGACCGTCTAATGGAAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGTTTGGAAAGCAGTGCTGTAGAGGAACTGGACAAATTACTTATTCATTCGTTGTTTGAGGGAAATGGAGATTCATATTCATTTAAAAGTAAGCTTGAAAATCTTCCGGACAATGTGGTTGTAATAGGTTCGCACACTCAAAATGACAGTCGCAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCAGATAGTTTCGGACGATTGCATGACAGGGGGAAGGAAGTCCCGAAACCAAATAGAACTTTGACTAAGCTTTTTCCAAATAAAATTACAATTCACATGCCACAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTACATCACTTGCGCACAGTTTTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTATGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCTGAAGCTAAACCTGATTCGAAGCTTGTATTGTCGTGTGAGAGCATTCAATATGGAATTGGGATCTTGCAGTCTATCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCGTGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTCGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTAATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCACGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGTACGAAGGAAACGGAGCGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTTGATGAGGCTGTCATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTCGCAAGTATGACCGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGCTGCTGCTCTAGCAGAAGGCCAACCAGCTCCAGCATTATGCAGCAGTGGGGACGTCAGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAGCAGGTATGTGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAATTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3522 0.4358 MVWTRRSGSLSAKRSSTSEDKPPSPKRQKVDNGGSSEKSVPTPAENSKDLSTPEPVPDPGECGSGDAQIAGAGAADGVSSGKGDATPAVPVTAPIADAACPSFSSWINYQKQNPNIEGAPWCRFLSQSAQNPNVAVCTPNFTIGSNRSCNFPLNDQTISGNLCKIKHTQHDGSAVAVLESTGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEVQSGIGKFLPLERRSGDPSAVAGASILASLSNRQDLTRWKSPSQTSSKPHQGTDVSSHSVHHDCTENELDGSESTPNVRSDKAADVRTSDKNSTMDCDPDAGAEAGNVKISGVLEERNGMLDMQAASTLGTSVRCAVFKEDVHTAILDGKEIDVSFDSFPYYLSENTKNVLVAACFMHLRHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSFSCTKQSPSADMARSIDPLASETETPSPSNAPTSYDFESQPKLETDNIPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSPRGPSNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEGNGDSYSFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGQPAPALCSSGDVRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01539 1173 Pfam ATPase family associated with various cellular activities (AAA) 909 1038 IPR003959 GO:0005524|GO:0016887
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 507 540 - -
Pumo4g01539 1173 ProSiteProfiles Forkhead-associated (FHA) domain profile. 141 194 IPR000253 GO:0005515
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 268 335 - -
Pumo4g01539 1173 ProSitePatterns AAA-protein family signature. 1012 1031 IPR003960 GO:0005524|GO:0016887
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 19 33 - -
Pumo4g01539 1173 CDD FHA 141 221 - -
Pumo4g01539 1173 CDD RecA-like_ATAD1 872 1038 - -
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 288 302 - -
Pumo4g01539 1173 SUPERFAMILY SMAD/FHA domain 108 221 IPR008984 GO:0005515
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 34 49 - -
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 1 18 - -
Pumo4g01539 1173 SMART AAA_5 905 1042 IPR003593 GO:0016887
Pumo4g01539 1173 Coils Coil 829 849 - -
Pumo4g01539 1173 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 371 1172 - -
Pumo4g01539 1173 Gene3D - 120 229 - -
Pumo4g01539 1173 Gene3D - 1041 1135 - -
Pumo4g01539 1173 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 867 1043 - -
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 1 85 - -
Pumo4g01539 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 867 1148 IPR027417 -
Pumo4g01539 1173 Pfam FHA domain 142 211 IPR000253 GO:0005515
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 268 287 - -
Pumo4g01539 1173 Gene3D - 867 1148 IPR027417 -
Pumo4g01539 1173 MobiDBLite consensus disorder prediction 506 540 - -
Pumo4g01539 1173 Pfam AAA+ lid domain 1062 1097 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01539 Pumo-Chr4 19287456 19298622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01539 868 1116 Calmodulin-binding Proteins AT3G56690 39.453 2.44e-41 163