Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01537 ATGGATATGGTTATAGAGGTTCTCTCCGGTGCGCATTTCTCCGGTTGGCATCCTTCTACGACGTCGTCTTCTTCTCCAACACGCTCACAACAACCCTTCGTCATCGGTGTCTCTGGAGGCACTGCATCGGGGAAAACTACAGTGTGTGACTTGATCGTTCAGCAACTGCAAGATCACAGAGTTGTGCTCCTTTGTCAGGATTCATTCTACCGCGGTTTGACAAATGACGAGTTGAAACGCGTTCATGAGTATAATTTTGATCATCCTAATGCATTTGATACAGAGCAAATTGTAGAAACCCTCAGTAAGCTCAAATCTGGACAGTCGGTTCAGGTTCCAATATATGATTTTAAGCTTCACCAGAGATCTTCTGACGAATCCAGACAGGTCTATTGCTCTTCCATTTTATTTGTCTCAAGCTTTTTTTTCCCATCTATGACAGATCCAGATGTAAGGCTTGCTCGCAGAATAAGACGTGATACTGTTGAAAGGGGTAGAGATGTACACTCTGTACTGGAACAGTATGCAAAATTTGTTAAGCCTGCCTTCGAAGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATCATACCTCGCGGGGGAGAGAATCGTGTAGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCGAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGGGACATATCAAAGCATGATTTTGTTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGATACTTGCCGTTTACAGAGAAACAAATTATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTATCCATTATTCGAAGTGGCGAAAGCATGGAAAATGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATCGGAAAAATTCTCATTCACCGTGAAGGTGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTTGGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGTACAGGTAACACTGCCAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGAATACATTGTGTATGTAAACGTTTTCCGCATCTTAAAATTGTCACATCGGAGATTGAAGAAGGATTAGATGACCAGTTCCATGTCATACCAGGGTTAGGAGAATTTGGTGACCGCTACTTTGGTACGGACGATTCCTAG 1323 0.418 MDMVIEVLSGAHFSGWHPSTTSSSSPTRSQQPFVIGVSGGTASGKTTVCDLIVQQLQDHRVVLLCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQIVETLSKLKSGQSVQVPIYDFKLHQRSSDESRQVYCSSILFVSSFFFPSMTDPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFEDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQIITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGGDETQLIYEKLPKDILERHVLLMDPVLGTGNTASQAIELLIKKGVPESQIIFLNLISAPEGIHCVCKRFPHLKIVTSEIEEGLDDQFHVIPGLGEFGDRYFGTDDS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01537 440 FunFam Uridine kinase 222 437 - -
Pumo4g01537 440 Pfam Uracil phosphoribosyltransferase 236 437 - -
Pumo4g01537 440 Gene3D - 28 221 IPR027417 -
Pumo4g01537 440 Gene3D - 222 437 IPR029057 -
Pumo4g01537 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 211 IPR027417 -
Pumo4g01537 440 FunFam Uridine kinase 29 221 - -
Pumo4g01537 440 CDD UMPK 34 218 IPR000764 -
Pumo4g01537 440 MobiDBLite consensus disorder prediction 16 36 - -
Pumo4g01537 440 Pfam Phosphoribulokinase / Uridine kinase family 34 138 IPR006083 GO:0005524|GO:0016301
Pumo4g01537 440 Pfam Phosphoribulokinase / Uridine kinase family 147 206 IPR006083 GO:0005524|GO:0016301
Pumo4g01537 440 CDD PRTases_typeI 295 410 IPR000836 -
Pumo4g01537 440 PRINTS Uridine kinase signature 186 199 - -
Pumo4g01537 440 PRINTS Uridine kinase signature 150 160 - -
Pumo4g01537 440 PRINTS Uridine kinase signature 32 49 - -
Pumo4g01537 440 PRINTS Uridine kinase signature 164 175 - -
Pumo4g01537 440 PANTHER URIDINE KINASE 27 348 - -
Pumo4g01537 440 SUPERFAMILY PRTase-like 221 438 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01537 Pumo-Chr4 19267493 19272649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01537 1 439 PRT Gene Family AT5G40870 71.639 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01537 K00876 - gmx:100816209 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01537 4 19267493 19272649 Pumo4g01537 4 19267493 19272649 ECH