Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01529 ATGCAGATGCAGCAGATACAGAGAGAGGTGGGAGAAAAAGAGGCAGTGGTGGCATGCAGTGACAAGAGCATGAAGATAGGGGCGACGATGTGGGACTTGGAAACAGGAGAAAAACTGTTTCACATACCAACCTGTGCCTCGCCACCTTTCGGCTTCTTGTGCTTAAAAAACCGTTTCCTCGTGGCGTCTCAATCGAACAAACACGGGTCTGTTGGCGACGGAGCCATTGCAGTATGGTCCTTCAACAAGCCTCAACAGCCACTTTTGAATTACACAGTGGAGGCTATTGGGCCACTTTCTTGTACAAATGATGGCATATACCTCGTGGGAGGAGCTTTGTCTGGAAATGCTTATCTTTGGGATGTAACCAATGGAAAATTGTTGAAGACTTGGAGGGCTCATAATAAATCTTTAATCTGCATGCTATTTTCAGATGACAATTCTCTTCTTATTTCTAGTTCAGATGATGGAGTGATCTGTGTTTGGTCCATGATTAGTCTGTTAGATGTAGAAGAAACAAGAAGCTCGCCGCCTCCATTACATTGTTTCTTAGGGCACATGTCCTCCATAACAGGTCTTTTAACTACACCAAACAGTTACTTCTCAATATTAGTATCAAGCTCCCTTGATGGCACATGCAAGGTTTGGGATTTTATCTCAGGAAGGCTTATGCAGACTCAAGATTATCCTTTTGCAATAACTTCCATCGCCCTTCACCAAAGCGAAAGGCTCTTGTTTTGCGGAACAGAAAAGGGAACAATAATTGTTAACAAGCTTGATGTTGGTCAGGAAGAAGGTCCTTCCATTGTCAATGGAGGCCAACAACCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCCTTGACCTCCTCTCGGGCATGCCTAATATCTGCCTCTGAAGATTGCTCTATCTGTGTATGGGATATCTTCAATTGGGAAATCATTCAAAGGTTCAGTCTTCAAAAAGCGGGGAAAGTAACTAATCTTGTGGTGGTTTCACGGTCCTCGTTGCTCCCTACATCAAACCACCGGAGAGTCCCCAATCAATATTATGTTTCTCAACTTGACAAGTATCCTCAGATGATCAACTCATTCAAGGGAACTACCACTCTCCTTTCCTTATGTCCACTCTACAAAGGAATTCAAACTAGCATTGATATGAGAAGTAATGGTTTATTGAAACAGAAGATTTCTGGTTCACAGAAAGCAGATCTGCCTACGGCCATGGCGATACAAATGAAAGTGGAAACAAATGTAGAGAGTCGTTTATGGGCGACAAACATGGCAAAGCATGTCATGGTGATAAACAAACAGTTGCAGTCACAACTATTGGACATGATGCAACGCAGATTGTTTCCTACAAACAACATCAACTTGCCAAAAACTACTAGAAAAAAGCTCAAAATTCAGAGTCTGGTGCAGGAAGAGGAAGATCAGAAACCTTAG 1449 0.4279 MQMQQIQREVGEKEAVVACSDKSMKIGATMWDLETGEKLFHIPTCASPPFGFLCLKNRFLVASQSNKHGSVGDGAIAVWSFNKPQQPLLNYTVEAIGPLSCTNDGIYLVGGALSGNAYLWDVTNGKLLKTWRAHNKSLICMLFSDDNSLLISSSDDGVICVWSMISLLDVEETRSSPPPLHCFLGHMSSITGLLTTPNSYFSILVSSSLDGTCKVWDFISGRLMQTQDYPFAITSIALHQSERLLFCGTEKGTIIVNKLDVGQEEGPSIVNGGQQPLELKGHNGAITALTSSRACLISASEDCSICVWDIFNWEIIQRFSLQKAGKVTNLVVVSRSSLLPTSNHRRVPNQYYVSQLDKYPQMINSFKGTTTLLSLCPLYKGIQTSIDMRSNGLLKQKISGSQKADLPTAMAIQMKVETNVESRLWATNMAKHVMVINKQLQSQLLDMMQRRLFPTNNINLPKTTRKKLKIQSLVQEEEDQKP 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01529 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 164 IPR001680 GO:0005515
Pumo4g01529 482 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 16 323 IPR011047 -
Pumo4g01529 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 318 IPR001680 GO:0005515
Pumo4g01529 482 Gene3D - 2 226 IPR015943 GO:0005515
Pumo4g01529 482 Pfam WD domain, G-beta repeat 277 309 IPR001680 GO:0005515
Pumo4g01529 482 Pfam WD domain, G-beta repeat 125 163 IPR001680 GO:0005515
Pumo4g01529 482 Pfam WD domain, G-beta repeat 179 217 IPR001680 GO:0005515
Pumo4g01529 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 164 - -
Pumo4g01529 482 PANTHER WD-REPEAT PROTEIN 18 14 449 IPR045227 -
Pumo4g01529 482 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Pumo4g01529 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 217 - -
Pumo4g01529 482 Gene3D - 227 342 IPR015943 GO:0005515
Pumo4g01529 482 PRINTS G protein beta WD-40 repeat signature 204 218 IPR020472 -
Pumo4g01529 482 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Pumo4g01529 482 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Pumo4g01529 482 SMART WD40_4 124 163 IPR001680 GO:0005515
Pumo4g01529 482 SMART WD40_4 176 217 IPR001680 GO:0005515
Pumo4g01529 482 SMART WD40_4 84 121 IPR001680 GO:0005515
Pumo4g01529 482 SMART WD40_4 220 258 IPR001680 GO:0005515
Pumo4g01529 482 SMART WD40_4 272 309 IPR001680 GO:0005515
Pumo4g01529 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 226 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01529 Pumo-Chr4 19206051 19211729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01529 98 319 U-box Gene Family AT2G33340 25.316 1.55e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01529 K14829 - gmx:102662801 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01529 4 19206051 19211729 Pumo4g01529 4 19206051 19211729 ECH