Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01528 ATGGCTACTTGTACTTCTCTTTCTCTATGTCCTCACACTTTCTGTTGCCGCCACCGCCCTTACCCTACGCGCCGCTCCCTTACGTGCTCTCTCTCCTCTTCTTCCCTCTCAGATACGGATGGACCTAAAGTACTGCGTAAAAGATCGAGAAGAATAGAAGGTCCTAGAAAAAGCATGGAAGACTCTGTTCAACGTAAGATGGAGGAATTCTACGAAGGACGGGATGGGCCACCCCTCAGAGTTCTTCCAATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGCAACTACGATCGGTATATCCTCATTGATGCTGGTGTCATGTTCCCAGACTATGACGAGCTTGGAGTCCAAAAGATCATACCTGATACAACATTTATAAGGAAATGGAAGCACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGCATTAGATTCTCATACGCCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTCAAAGTATTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAGGTAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGACTAGTGCTCCGTTGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAATCAGTGAATCTGTTGTGGCAGATGCATTATTGAGGAATATTTCAGCTGCTAAAGGAAGGGTTATAACGACCCAGTTTGCATCAAACATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCATTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAAGATATTGATGCTTATGCGCCAAAGGATTTGCTTATTGTAACAACGGGCTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAAGATATTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACTATAATGATGGGGAAGAATGAATGTCTGCACACGTCTGGTCATGGGTATCGTGGAGAACTGGAGGAAGTACTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTGAGTGATTGGCTCCTTATCCAATGTTCTTATGTGATAGATACATGA 1503 0.4232 MATCTSLSLCPHTFCCRHRPYPTRRSLTCSLSSSSLSDTDGPKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWKHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEVEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISEIGSTIMMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVSDWLLIQCSYVIDT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01528 500 Gene3D - 83 485 IPR036866 -
Pumo4g01528 500 PANTHER RIBONUCLEASE J 1 486 - -
Pumo4g01528 500 SMART Lactamase_B_5a 91 288 IPR001279 -
Pumo4g01528 500 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Pumo4g01528 500 Gene3D - 280 430 IPR042173 -
Pumo4g01528 500 MobiDBLite consensus disorder prediction 41 59 - -
Pumo4g01528 500 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Pumo4g01528 500 CDD RNaseJ_MBL-fold 82 269 - -
Pumo4g01528 500 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 484 IPR036866 -
Pumo4g01528 500 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01528 Pumo-Chr4 19182871 19188718 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01528 - - gmx:100814619 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01528 4 19182871 19188718 Pumo10g01894 10 25001970 25010274 PCT