Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01527 ATGTGGATGGGATATCGAACTTTGAGAAAAGTGGTGGATGGACATGGGAAAGAAAATCAGAAAACCAAAATGCAAATACGAGATCGTATTGATGTAGGTGGTCTACTACCTACTGAAGACATCGCTATCTCAAGTGGAGCTGAGGATGACTTGTCTGGTGCGGAGGATTCAGATGATTATTTTAAAGCATTTGTTGAATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTCCACGAAAGGAGAAGTCGTCCCCATTGAAGGATGACGGTTCTGAAGACACTGAAGAATGCAATTCTGTAAATACATCAAATCCTGAATCTAAATCTTCAAAATCAGCAAAGAAAAATAAATGGAAACATGATGAAGTTAAGAAGCTGATTGGTATGCGCGGGGAACTGAACGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGTTACAGAAATATGAGGAGGTGAAGAATGAGAAGAGCAAGAAAAAATGGCCGTATCTTGAGGACATGGAAAGGATTCTGTCTGATAACGCGACACTAGCAACAAAATGA 639 0.4053 MWMGYRTLRKVVDGHGKENQKTKMQIRDRIDVGGLLPTEDIAISSGAEDDLSGAEDSDDYFKAFVESSPVEKSIKANNGYVPRKEKSSPLKDDGSEDTEECNSVNTSNPESKSSKSAKKNKWKHDEVKKLIGMRGELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEEVKNEKSKKKWPYLEDMERILSDNATLATK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01527 212 ProSiteProfiles Myb-like domain profile. 114 178 IPR001005 -
Pumo4g01527 212 Pfam Myb/SANT-like DNA-binding domain 120 202 IPR044822 -
Pumo4g01527 212 MobiDBLite consensus disorder prediction 74 121 - -
Pumo4g01527 212 CDD GT1 124 185 - -
Pumo4g01527 212 Gene3D - 122 183 - -
Pumo4g01527 212 PANTHER RIBONUCLEASE J 17 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01527 Pumo-Chr4 19179666 19182189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01527 121 204 Trihelix Transcription Factor Family AT2G38250 35.632 6.18e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo4g01527 Myb_DNA-bind_4 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01527 - - gmx:100814619 348.977