LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g01523	ATGGCGGCAGGGCGAAAAAGTGTTTCGCTGAGAAGGGAATTTTGCAAATATGGTTCCACCAAGGGGTTTGATCACTATAAGAATGGTTCTTTCGGCGCGGAAGTTGGTGGATCTCGCAGCCACCACTTCCCTCGTTCGGGAGAGAATCAGTTTCATGGTGGAAAAGAGGAAGGTGAGATCTGTGTTGAACGTGAAGAGCGTGCCTCTGGGGTGCCACCGCCAGAGAAGAAAAGGAAGTTTTCTCCAATCATATGGGACCTAGCAGAGAAGGAAGAAAGAGTCTCTTCAAAGAGTAGGATCTCGCAGATTGCTGCTCTGTCTCCCCCTCGTCCATCTCTACTGAGCAGTCCTGGAGCCAACGGTGTTGATTGTGGGGATGTTATGGAGGAGTCTTCGCCAGATTTGCGAAGCTATAAACAAGATGTGGAGGAAGAGAATGATGTGCAAGGATGGACAATCACAAAGTCAAGATGGGCTCGTGATGATGGTCCCTCGCCAAGGGGTGCTGATGATAAGCACAAGCATGGCAAAGTGAGCTCCAGTCCTGAAATTGGTGAATTCCATGGCGGTGGATCTTCGGAGAGCACAGTCACTAGATCATCAGGAAGCAGTGGAAGAGATCATTATCTGGGCCCTTCTACTGATGACACCGATTCTGAAAAGGATTTCCTTATGGACTCCATGGTCGATGTTGAGGAACAAAGTGATGTTTGTGATTCTCCTTCAGATTCTGATGAGAGTGGTAGTCTGATGCATGTGCAGAGAAACATAAACATGCTTCGGAGTTGCAGAAGTGTGTGCGAGTTTGAGATGATTAAGAAAATAAACGAAGGAACTTATGGTGTTGTCTACAAGGCTAGGGATAAGAAGACCGGAGAACTAGTAGCATTGAAGAAGGTGAAGATGAACATAGAGAGGGATGGCTTTCCCATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTTAATCATCCCTCCATTGTGAATGTTAAAGAAGTAGTTGTAGATGATTTTGATGGTACTTTTATGGTAATGGAGTACATGGAGTATGACCTTAAGGGGCTGATGGAGGTTAAGAAGCAGCCCTTTAGCATGAGTGAAATTAAATCCTTGATACGGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAATTGGGTTATCCATAGGGACTTGAAGTCATCAAACATACTACTGAACCATGACGGGGAGCTTAAAATATGCGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCGCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGCTGGGTGCTAAAGAATACTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAGTTAATTGCCAAGGAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATAAGATTTTTCGAACCCTGGGTACACCTGATGAGAAAATTTGGCCAGGATTATCCAAATTACCGGGGGCTAAAGCAAATTTTGTTAAGCAACCGTTTAATACACTAAGGAAGAAGTTTCCAGCTGCATCATTTACTGGTTTGCCAGTTTTATCTGAGCTGGGATTCGACTTGTTGAAGCAGCTGCTAACTTATGACCCTGAAAAGAGGATAACTGCAGAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCTCTTCCCAAATCTGATTTCAAGCCAATTTTCCCTTCTTGGCAGTGCTAG	1737	0.4479	MAAGRKSVSLRREFCKYGSTKGFDHYKNGSFGAEVGGSRSHHFPRSGENQFHGGKEEGEICVEREERASGVPPPEKKRKFSPIIWDLAEKEERVSSKSRISQIAALSPPRPSLLSSPGANGVDCGDVMEESSPDLRSYKQDVEEENDVQGWTITKSRWARDDGPSPRGADDKHKHGKVSSSPEIGEFHGGGSSESTVTRSSGSSGRDHYLGPSTDDTDSEKDFLMDSMVDVEEQSDVCDSPSDSDESGSLMHVQRNINMLRSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGLMEVKKQPFSMSEIKSLIRQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIAKEPLFRGKSELEQLDKIFRTLGTPDEKIWPGLSKLPGAKANFVKQPFNTLRKKFPAASFTGLPVLSELGFDLLKQLLTYDPEKRITAEDALLHDWFHEAPLPKSDFKPIFPSWQC	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g01523	578	Gene3D	Transferase(Phosphotransferase) domain 1	351	569	-	-
	Pumo4g01523	578	CDD	STKc_CDC2L1	263	559	IPR045267	GO:0004674\|GO:0005524\|GO:0006468
	Pumo4g01523	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	388	400	IPR008271	GO:0004672\|GO:0006468
	Pumo4g01523	578	SUPERFAMILY	Protein kinase-like (PK-like)	264	564	IPR011009	-
	Pumo4g01523	578	PANTHER	CELL DIVISION PROTEIN KINASE	268	565	-	-
	Pumo4g01523	578	MobiDBLite	consensus disorder prediction	36	58	-	-
	Pumo4g01523	578	Gene3D	Phosphorylase Kinase; domain 1	251	350	-	-
	Pumo4g01523	578	MobiDBLite	consensus disorder prediction	160	181	-	-
	Pumo4g01523	578	FunFam	Cyclin-dependent kinase G-2	351	578	-	-
	Pumo4g01523	578	MobiDBLite	consensus disorder prediction	191	210	-	-
	Pumo4g01523	578	SMART	serkin_6	269	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01523	578	Pfam	Protein kinase domain	269	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01523	578	FunFam	cyclin-dependent kinase G-2 isoform X1	254	350	-	-
	Pumo4g01523	578	MobiDBLite	consensus disorder prediction	129	150	-	-
	Pumo4g01523	578	ProSiteProfiles	Protein kinase domain profile.	269	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01523	578	MobiDBLite	consensus disorder prediction	91	220	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g01523	Pumo-Chr4	19144556	19146735	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g01523	264	565	Core Cell Cycle Gene Families	AT5G10270	44.969	5.65e-86	274

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Pumo4g01523		Pkinase	3.9e-74	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g01523	K08818		-	gmx:100788840	1023.46