Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01514 ATGTGTTGGGTTTCGCAAAACCCTCCACCCGCTCATATATTTTTGATATCTGGTGACACAGACTTCGCTGGCGTGTTGCATAGGTTGAGAATGAGCAACTACAATATCTTGCTTGCTACTCCAGAGAGGGCTCCTAGTGTTCTCCACAGTGCCGCGACTATAGCATGGCATTGGCATTCGATGCTTAAGCGAGAAAATCTCGCTGGAAAATGTTTCAACCATCCTCCTGATGGGCCGTTTGGTTCTTGGTATGGAAGCTACAAGGCGGATTCCCTTGAGAAACCGGTTGCGGCGGCTCAGGAGGCTGCCTCTTTGCCCAATGTGGAGGTCTATGAGCCTTCTTCTGGCTCAGTTCCAAAGTCAGTTGTGAGACAGGTCTGGCATATATTGAGTTTGCATCCGGAAGGGATGGGCATTGGTGTTCTTCGAGCGGAGTTGGCAAAATGTGGTGTGCGTTTGGACAAAAGTTTGTTTGGACATAAAAGGTTTTCCCGTTTCCTGTGGTCGTTGCCACGTGTACAGCTTCGGGCTGGTGGTGATGGTTATTTTACTGTACATTTGGAATCCCCAGAACCTTGCGAGAGCAGTTCTGTGGCATCGACTATGTCTGGTGTGAAAAATGGGGAGAAAGGATGTGCAGCGACTCCAAAGGTAAATGGTGAGGATAAAAGTAAGGTTAGGGGTGCTGATGAGAAATTCTCACTTGCCTCGATCCTTGAAAGGAGTTCGGATGACGATTTAAATTCAGTTCAACTGGGGCCTTCACAAGGGAGATCCAATGAGGAATCATCATCTCCTGTATTGGTTGAAAGGCATGTTTGTCAGCCACCAAATGAGTTGCGGAAATCTTCTGTGGCTTGTGACAAGGTTGTGGATGTGGCTAATGCACAACAGTCAGAGACTCAACTAAAACCCAAGGACAACAAAGATTCCAAAACTAAGATTGATTCCTTAAAAGTGACTTCTCAAAAGTCGTCTGATGAAGACATTGTTAGCTCTGAGGATGCAAGTCATAAAAGTATGGAAAAACATACAACTTCAGAGATTCACTCTGCTGGAAATGATCAATCAATGGTGGAAAACAATGTTATCGCAAATTCTGAGTCTGGAAATTTTGAAGCAAAGAACGAATGTGAGAATCCAACTAGAAAGGAGGTTGATGAAGTTTTTCACAGCCCATCTTCACCAGTTGATGGCTCTCAAGTTGTCCAAACAGCTGGTGGAAGTGCTGAAACTAATAACAGAAGTCCAACATTGTTTCACTGGATTAGAAGTTGGTGGCCATTTGGGAAAAGCAATTGCAAAAACAAGGTGGTTAGTCATGTTGAGGATTCCAAGCTATCTGAACTGGACCAGACTGTTAGTCAATTTGAAGAGCCCAAGTTATCAGAACTGGATCAGAATGTTAGTCATGTTGAGGATTCCAAGTTATCTGAACTGGACCAGACTGTTAGTCAATTTGAAGAGTCCAAGTTAACAGAAGTGGATCAGAATGTTAGTCATTCTGGAAATCCGGAGTTATTTTCTAGTGCTTCCTTTTGGAATGATATGGAATCTTTTATTTTTGCGCCCAAGGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCATAAATTACAAAATGGCGGACCCTTGGTTCTTAGATCACTCCCCAAAGAAGACATCCTTCAATTGGTGGAATTGTTAATAGCAGAGAAAAAATGGTTGGAAGAAAGCCCCTCCAAAACATTTCCTTTTAAGCTAATTCGACCAGTTCAGAAGAATTCATTGGTGGACCAATCCCATGGTGCAAATGGTTTGAGATCTCTCTTTATAGGTAGAACATCACAGTCGAACTTGCAAAAATCATTAGAACACGATGTGGAGAAACACAATCAGAGTATTTCTCATGCTCGAGTTTCTGCACCGGCCACTGAAACAAAATATACTGAGAGATCTAGAAGTGATATATTAGAAGACTGTAAGAAACTTGTGAGCGAGATACTGAGGGAACACCCAGAGGGGTATAATATTGGTTCTTTCCGAAGATTATTTGTTGATAGGTATGGCTATCATCTTGATATACAGAAGCTTGGTTATCAAAAGTTGGCAGCCTTGCTACAGATAATGCCTGGGGTTAAATTAGAGTCCACTTATATTTTTCCTTCTGTTCCTGTTGTCAGTGATTCAGACTTGGAAACTTCTATCCTCAAAACTCAAGCAACCACTGATATTCATGCAGCTTCTAACTCAGATAGTGAATTATCTGAGTCAGCCCCGAAAGATGATAACATGGAATCTCCATGGCAGGAGTTAGGTCCTGTTTCTATCACCAATTCCAACAAGAGTGATTTGGAATTGAAGTCAAGTCAGAAAGCTATAGAACTGGATACATCAAAATCAAAGTGTCCTGATTATGAACCTGTCGTATCAGATGATGAGTTTTCTGCATCTGATGGAGATGGCTCTTGTTTAACTCAATCTGAAGAGCAAAGAAAGCCTAAATGTAATGAACTAGACAGTTCTTTTTGGCAAGCTATGGATTTGTCGCACAGCAGCAAGGAAGGAGAGAACAGTGCTAAGAAGCCAGACAATGTTGACAGCTTGGGTGCTTCTCTGGCTGATATTTTAGATTCATCCACTGACTCGACCGGGGATACCCTTTCCCAAATTCCTTCATCAAATTACAGAGAGAATAGTGTCAAGAATTCAGACAATGTTGACAGCTTGGCTGATATTTTTAATTCATCCCCTGAGTTGACCAGGGGTACCCTTTCCAAGCCTTCATCAAATTACAGAGAGAAGCAAAGATCTCATAAGAGCTATTCCTTTGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTAGTTGATGGCTTCAAGAAAGCAGATGAGTCAAAGATGCAAAACTGA 2904 0.4236 MCWVSQNPPPAHIFLISGDTDFAGVLHRLRMSNYNILLATPERAPSVLHSAATIAWHWHSMLKRENLAGKCFNHPPDGPFGSWYGSYKADSLEKPVAAAQEAASLPNVEVYEPSSGSVPKSVVRQVWHILSLHPEGMGIGVLRAELAKCGVRLDKSLFGHKRFSRFLWSLPRVQLRAGGDGYFTVHLESPEPCESSSVASTMSGVKNGEKGCAATPKVNGEDKSKVRGADEKFSLASILERSSDDDLNSVQLGPSQGRSNEESSSPVLVERHVCQPPNELRKSSVACDKVVDVANAQQSETQLKPKDNKDSKTKIDSLKVTSQKSSDEDIVSSEDASHKSMEKHTTSEIHSAGNDQSMVENNVIANSESGNFEAKNECENPTRKEVDEVFHSPSSPVDGSQVVQTAGGSAETNNRSPTLFHWIRSWWPFGKSNCKNKVVSHVEDSKLSELDQTVSQFEEPKLSELDQNVSHVEDSKLSELDQTVSQFEESKLTEVDQNVSHSGNPELFSSASFWNDMESFIFAPKGSLLFSQSRSREDVVHKLQNGGPLVLRSLPKEDILQLVELLIAEKKWLEESPSKTFPFKLIRPVQKNSLVDQSHGANGLRSLFIGRTSQSNLQKSLEHDVEKHNQSISHARVSAPATETKYTERSRSDILEDCKKLVSEILREHPEGYNIGSFRRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKLESTYIFPSVPVVSDSDLETSILKTQATTDIHAASNSDSELSESAPKDDNMESPWQELGPVSITNSNKSDLELKSSQKAIELDTSKSKCPDYEPVVSDDEFSASDGDGSCLTQSEEQRKPKCNELDSSFWQAMDLSHSSKEGENSAKKPDNVDSLGASLADILDSSTDSTGDTLSQIPSSNYRENSVKNSDNVDSLADIFNSSPELTRGTLSKPSSNYREKQRSHKSYSFVADPVLPNKDKLVDGFKKADESKMQN 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01514 967 MobiDBLite consensus disorder prediction 245 268 - -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 303 349 - -
Pumo4g01514 967 ProSiteProfiles OST-type HTH domain profile. 654 728 IPR025605 -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 740 780 - -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 389 414 - -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 245 266 - -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 871 928 - -
Pumo4g01514 967 Pfam NYN domain 1 52 IPR021139 GO:0004540
Pumo4g01514 967 PANTHER LIMKAIN B LKAP 1 665 IPR024768 GO:0005777|GO:0010468
Pumo4g01514 967 MobiDBLite consensus disorder prediction 394 414 - -
Pumo4g01514 967 Gene3D - 649 716 IPR041966 -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 297 357 - -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 207 226 - -
Pumo4g01514 967 MobiDBLite consensus disorder prediction 796 943 - -
Pumo4g01514 967 CDD LOTUS 655 710 - -
Pumo4g01514 967 Pfam OST-HTH/LOTUS domain 654 713 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01514 Pumo-Chr4 19055272 19058438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01514 1 58 C2H2 Transcription Factor Family AT5G61190 53.448 4.55e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01514 - - gmx:102661134 1571.6