Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01511 ATGGTCCCTCCTCTTTATAGTGCCTTCAACGGCGAAATCGATGGTGAAAATCTACCTTTTTTTGATATCTGGGCAACCGATTTCTATGGCTATGGCTATGGCTATTATCCTCATCAACCTATTTCGGAGAATGGCACTTCTACATTGGTTGATCTCCCCTTTTGCGATGGTACCATCAGGGATAACAAAAGGGTGAAGAGAACCGTGTGCTTCCCTATTTATAACACCATTAATTGCCATAGTTTCCTCAACACCAACAGCAGCAGTAAGAATAGCATACCAAAACTCCATTTCAGAGATCACATACGGACTTACACTCAAAGATATCTCGCAGCTGAAACCGTGGAAGAGGCATCAGAAGATACGAACAGTTCAGAAAGTAGTGGAGGCGAAGAAGATGGGTGTGCAGATGGAGTGAGGCTCGTTCAACTTCTAATAGCATGTGCTGAAGCTGTGGCTTGTCGCGACAAATCACACGCTTCCATATTACTGTCCGAGCTTAAAGCCAATGCTTTAGTATTCGGATCCTCATTCCAAAGGGTTGCTTCTTGTTTCGTTCAAGGCCTGACCGAGAGGCTCAATCTGATTCAGCCCATCGGGTCCACGGGCCCGATGCCACCCAAGATGAACATCATGGACGCAGCCTCCGAAGAGATGGAAGAAGCATTCAGGTTGGTTTACGAGCTGTGTCCGCACATCCAGTTCGGACACTACGTGGCTAATTCCGCAGTATTGGAAGCCTTTGAGGGTGAGAGTTTTGTCCATGTCGTGGACCTAGGTATGAGCCTGGGTCTTCGACATGGACACCAATGGAGAGGTCTGATCCAGAGCCTTGCAAACCGTGCAGGCGGCGAACGTCTTCGCCGCCTGCGAATCACGGGAGTGGGACTCTGCGATAGACTTCAAACCATTGGCGAAGAACTCTCCATATATGCAAACAATTTGGGCGTCAACTTGGAGTTCTCAGTGGTGAAAAAGAATCTGGAAAATTTGAAACCAGAGGACATACAAGTGAGGGAAGAAGAGGTTCTTGTGGTGAACAGCATTCTGCAGCTTCATTGCGTAGTGAAGGAAAGCCGCGGGGCTTTGAATTCGGTGCTGCAGATGATTCACGGGCTTGGACCCAAAGTGTTGGTGATGGTGGAGCAGGACTCGAGTCATAACGGACCCTTTTTTCTTGGAAGGTTTATGGAGTCACTGCACTATTACTCTGCTATTTTTGACTCGTTGGATGTTATGCTCCCAAAGTATGACACTAAGCGGGCCAAGATGGAGCAGTTTTACTTCGCTGAGGAGATAAAGAACATTGTGAGCTGCGAGGGGCCGTTGAGGATGGAGAGGCACGAGAGAGTGGACCAGTGGAGGAGGAGGATGAGCAGGGCAGGGTTTCAGGCTGCACCTATTAAGATGGTGGCTCAGGCGAAGCAGTGGCTTCTCAAGAACAAGGTTTGTGAGGGTTACACTGTTGTGGAAGAGAAGGGGTGTCTTGTGCTTGGATGGAAATCGAGGCCAATGGTTGCAGTCTCTTGCTGGAAATGCTGA 1542 0.4864 MVPPLYSAFNGEIDGENLPFFDIWATDFYGYGYGYYPHQPISENGTSTLVDLPFCDGTIRDNKRVKRTVCFPIYNTINCHSFLNTNSSSKNSIPKLHFRDHIRTYTQRYLAAETVEEASEDTNSSESSGGEEDGCADGVRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLTERLNLIQPIGSTGPMPPKMNIMDAASEEMEEAFRLVYELCPHIQFGHYVANSAVLEAFEGESFVHVVDLGMSLGLRHGHQWRGLIQSLANRAGGERLRRLRITGVGLCDRLQTIGEELSIYANNLGVNLEFSVVKKNLENLKPEDIQVREEEVLVVNSILQLHCVVKESRGALNSVLQMIHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQAKQWLLKNKVCEGYTVVEEKGCLVLGWKSRPMVAVSCWKC 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01511 513 ProSiteProfiles GRAS family profile. 132 512 IPR005202 -
Pumo4g01511 513 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 508 IPR005202 -
Pumo4g01511 513 Pfam GRAS domain family 141 512 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01511 Pumo-Chr4 19029217 19030758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01511 133 513 GRAS Transcription Factor Family AT1G66350 38.701 4.83e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pumo4g01511 GRAS 1e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01511 - - gmx:100813548 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01511 4 19029217 19030758 Pumo4g01511 4 19029217 19030758 ECH