Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01501 ATGGAAGGCTCTGAATCCGATTCTGCTCCACTTTCCAATTCCAATGGCGAAGAGCCCCAATTGGGGGCACCTTCTTCCCCCGCCGCTCATCCTCAGCCGTCAGATCTCAATCACGCGGCGGCGGAGGAAGACCCACTCGCTGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGGTGGGGATGATAGTGAAGAGAAAGTTTCCGACTTGAACGATGCTGGAGGAGTTTGCGATGAAGAAACTGCTAAGGGTGATGGAGATAGTAGGGGTTGGGAGACCAATAGTTGGAATGAGGAAGTGGGTGTTGATGGTGATGGTGATGTTGATGTCGACGGTGATGCTGATGCTGATGATGGAGTGGAGAAGAAGGAAGAGAGAAACAGTGGTGTAACTCACCACTACCCTTTGAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTTAATCACCCCATTAGGAGGAAGAGCCAGGCTGTTAAAGAGAAGGCAGGAGAAAGAGAAGAAACCACAGAAAGATCAGGCATGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATATAACCACATAAGAGGAAAACTTTCAACAGCACCAGCACCAGTTTTGGAACTTAACTTTCTTGGCCTGCCTATTCGTCTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTCAACCATCCGGACCCTACAGCTGTTGGAGGATGTGATCCTCCTTCAGGGTATGGTAATGGAGGATCTATTTCATTACAAGGTGTATCACAACCATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACCTACCTGAGAGGAGCATGCATCCACCTTCTACATTTGTAATGAACAACCCAGCAATCGATACAAATATTTACATGCCCCATCAAAAGCAAATGCCTGTTGAAGAGTTTCCAGAAAGGCCTGGCGAACCAGAATGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAAAGTGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCGGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCTTAATGACGCCTGAACTTGGTCAGCAATCCTACTCAAACTCGGCTAGTGTTGAGGTGGCTGGGTTAGGTGGAAGTACAGTTGCCAATGGGGTGATGAACCTTGGTGTGTTGGCAACTAGTCAATACAACTGA 1464 0.4604 MEGSESDSAPLSNSNGEEPQLGAPSSPAAHPQPSDLNHAAAEEDPLAGELQSKLDLKGGDDSEEKVSDLNDAGGVCDEETAKGDGDSRGWETNSWNEEVGVDGDGDVDVDGDADADDGVEKKEERNSGVTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKSQAVKEKAGEREETTERSGMTECKYYQRSGGCKFGKSCKYNHIRGKLSTAPAPVLELNFLGLPIRLGERECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPPSGYGNGGSISLQGVSQPSVPSWSSPRTLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERSMHPPSTFVMNNPAIDTNIYMPHQKQMPVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMTPELGQQSYSNSASVEVAGLGGSTVANGVMNLGVLATSQYN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01501 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 257 IPR000571 GO:0046872
Pumo4g01501 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 208 IPR000571 GO:0046872
Pumo4g01501 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 415 439 IPR000571 GO:0046872
Pumo4g01501 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 369 394 IPR000571 GO:0046872
Pumo4g01501 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Pumo4g01501 487 MobiDBLite consensus disorder prediction 115 132 - -
Pumo4g01501 487 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Pumo4g01501 487 Gene3D - 413 459 - -
Pumo4g01501 487 MobiDBLite consensus disorder prediction 48 86 - -
Pumo4g01501 487 ProSiteProfiles Zinc finger C3H1-type profile. 413 441 IPR000571 GO:0046872
Pumo4g01501 487 Gene3D - 338 402 - -
Pumo4g01501 487 Gene3D - 110 172 - -
Pumo4g01501 487 Gene3D - 173 263 - -
Pumo4g01501 487 SUPERFAMILY CCCH zinc finger 372 396 IPR036855 GO:0046872
Pumo4g01501 487 SMART c3hfinal6 413 440 IPR000571 GO:0046872
Pumo4g01501 487 SMART c3hfinal6 136 163 IPR000571 GO:0046872
Pumo4g01501 487 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Pumo4g01501 487 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Pumo4g01501 487 SMART c3hfinal6 367 394 IPR000571 GO:0046872
Pumo4g01501 487 SUPERFAMILY CCCH zinc finger 135 164 IPR036855 GO:0046872
Pumo4g01501 487 MobiDBLite consensus disorder prediction 1 21 - -
Pumo4g01501 487 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Pumo4g01501 487 MobiDBLite consensus disorder prediction 1 132 - -
Pumo4g01501 487 SUPERFAMILY CCCH zinc finger 411 439 IPR036855 GO:0046872
Pumo4g01501 487 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Pumo4g01501 487 SUPERFAMILY CCCH zinc finger 186 213 IPR036855 GO:0046872
Pumo4g01501 487 ProSiteProfiles Zinc finger C3H1-type profile. 367 395 IPR000571 GO:0046872
Pumo4g01501 487 SUPERFAMILY CCCH zinc finger 232 258 IPR036855 GO:0046872
Pumo4g01501 487 PANTHER PROTEIN PHOSPHATASE RELATED 17 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01501 Pumo-Chr4 18966519 18970903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01501 359 487 C2H2 Transcription Factor Family AT3G02830 32.961 1.02e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo4g01501 zf-CCCH 7.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01501 - - gmx:100786894 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01501 4 18966519 18970903 Pumo10g01926 10 25400902 25405960 ECH
Pumo4g01501 4 18966519 18970903 Pumo4g01501 4 18966519 18970903 ECH
Pumo4g01501 4 18966519 18970903 Pumo10g01926 10 25400902 25405960 PCT