Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01500 ATGATCAACTGGAGCACCAGATGCAGAAGCAGCAACAGAGGAATCCTAGAAATCAGGCAAGACAAGCACCTTGCAGGAGAGGATATTATTTCTGATGACCAACTGGAGGGTCATTTTCGCAAGTATCAAAGAAGGATTCCTAAAAACAGGCAAGCCAAGTGTGTCAATGAGGAAGACGTAATGTCTGATGACCAGTTGGAGGATCACTTTCAGAAGCCCCAAAGGAGTATTCGAAGGAGCAAGCAAAATAAATACAATGATAAAGAGGTTATGGATGACTTGGCAGAAAACAATTTTCATGTACTGTATAGAACTCCTAAAAGGAAGCAAGCTAAATGCAGGGATGAAAACAATATAAATTCAGATGATCAAATGGAAGATATTTCTCATCAGCAGCACAAAAGAACTCTTCGAACTAAGCAATCTAAATCACAGATTCTTCAACAAATGAAACAAACTAACCCTCTCCGTGTGAGAAACAAGACATCCCGGCCGGTGAAACGAGGTGCTCATATGTCAATGAAATCAAAGGTTGCTCGGCGAGTGAAGCAGCAGCCTCGTGTATGGAATAATCAATCTGGTAACTCCAAAGACTTAACATTACATGTTGAAGAGGAGGAAGATGGTGGACCTAGCACACGACTTAGGAAGAGAGTCACAAGAAATCAAGAGTCTGAAGGAAAATTAAAAGAAAAGGAAACCAAAAGGAAAAAGGTTAAGAATGCAACAGCTGTGAAGGTTTCAGCTGGCCATGCCAAAATAAAGGATGAGGAATCAGAATACCAGTGTGACATTGAGGGTTGTACCATGAGTTTTGGGTCTAAACAGGAGCTATTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGTGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCAGCATCGTCGAGTTCATGAGGATGACAGGCCCCTGAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCACGCACCGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGTGCTGAGCCAGGGTGTGGGCAAACGTTTAGATTCGTATCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAACAAAGAAGAATTGTTGA 1131 0.4262 MINWSTRCRSSNRGILEIRQDKHLAGEDIISDDQLEGHFRKYQRRIPKNRQAKCVNEEDVMSDDQLEDHFQKPQRSIRRSKQNKYNDKEVMDDLAENNFHVLYRTPKRKQAKCRDENNINSDDQMEDISHQQHKRTLRTKQSKSQILQQMKQTNPLRVRNKTSRPVKRGAHMSMKSKVARRVKQQPRVWNNQSGNSKDLTLHVEEEEDGGPSTRLRKRVTRNQESEGKLKEKETKRKKVKNATAVKVSAGHAKIKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKNC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01500 376 SUPERFAMILY beta-beta-alpha zinc fingers 285 321 IPR036236 -
Pumo4g01500 376 Gene3D Classic Zinc Finger 285 312 - -
Pumo4g01500 376 Gene3D Classic Zinc Finger 229 284 - -
Pumo4g01500 376 SUPERFAMILY beta-beta-alpha zinc fingers 324 368 IPR036236 -
Pumo4g01500 376 Coils Coil 222 242 - -
Pumo4g01500 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 314 343 IPR013087 -
Pumo4g01500 376 SMART c2h2final6 284 308 IPR013087 -
Pumo4g01500 376 SMART c2h2final6 261 283 IPR013087 -
Pumo4g01500 376 SMART c2h2final6 314 338 IPR013087 -
Pumo4g01500 376 SMART c2h2final6 344 370 IPR013087 -
Pumo4g01500 376 FunFam Probable lysine-specific demethylase ELF6 341 370 - -
Pumo4g01500 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 344 375 IPR013087 -
Pumo4g01500 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 313 IPR013087 -
Pumo4g01500 376 PANTHER ZINC FINGER PROTEIN ZIC AND GLI 127 371 - -
Pumo4g01500 376 ProSitePatterns Zinc finger C2H2 type domain signature. 316 338 IPR013087 -
Pumo4g01500 376 ProSitePatterns Zinc finger C2H2 type domain signature. 346 370 IPR013087 -
Pumo4g01500 376 FunFam Probable lysine-specific demethylase ELF6 311 340 - -
Pumo4g01500 376 MobiDBLite consensus disorder prediction 162 182 - -
Pumo4g01500 376 MobiDBLite consensus disorder prediction 199 239 - -
Pumo4g01500 376 Gene3D Classic Zinc Finger 341 370 - -
Pumo4g01500 376 ProSitePatterns Zinc finger C2H2 type domain signature. 286 308 IPR013087 -
Pumo4g01500 376 Gene3D Classic Zinc Finger 313 340 - -
Pumo4g01500 376 MobiDBLite consensus disorder prediction 162 239 - -
Pumo4g01500 376 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01500 Pumo-Chr4 18960379 18961509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01500 210 374 C2H2 Transcription Factor Family AT3G48430 64.407 5.90e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo4g01500 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01500 - - gmx:100775813 504.982