Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01498 ATGGCGGGTTCGGAGGAGGTGTTCCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGCCCGACCGCGGCGGAGTTCCAGGATCCGATCGCCTACATCTTCAAAATCGAGAAAGAAGCCTCTCAATACGGCATCTGCAAGATCATCCCCCCGGTTCCCCCTTCCCCCAAGAAAACCGCAGTGGCCAACCTCACGCGCTCCCTCCCCACCTTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGCCCGCAGCCCGTGCGCCGCCCCGTCTGGAACAGCGGCCACCGCTACTCCCTCCGTGACTTCGAAACCAAGGCCAAAGCCTTCGACAAAACCCACCTCAAAAAACCCCCCTCCCCTCTCGAACTCGAAACTCTCTACTGGAAAGCCACGTTGGACAAACCCTTCTCCGTCGAATACGCGAACGACATGCCCGGCTCCGCGTTCAGCCCCCTCCGCTCCTGGCGCCACTACGCCGTCGGCGACACCGCGTGGAACATGCGCGTGGTTTCGCGGGCGAACGGCTCGCTTTTAAGGTTCATGAAGGAGGAGATTCCCGGCGTGACGTCACCCATGGTCTACGTGGCGATGCTGTTCAGCTGGTTCGCGTGGCACGTGGAGGACCACGACTTGCATAGCTTGAACTACCTTCATTTTGGTGCTCCCAAGACCTGGTACGGTGTGCCTAGAGATGCTGCGGTTGCTTTCGAGGAGGTTGTGAGGCTTCATGGCTACGGCGGAGAGATTAACTCTCTCGTTACTTTTGCTGTTCTTGGTGAGAAAACTACGGTCATGTCGCCTGAGGTTTTTATTGGCGCCGGTGTTCCCTGCTGCAGGCTAGTTCAAAATGCTGGGGAATTCGTTGTGACGTTTCCTAGAGCGTATCACACAGGATTTAGTCATGGTTTTAATTGTGGAGAGGCGGCTAACATTGCGACACCTGAATGGTTGAGGTTTGCTAAGGAAGCTGCTATTAGGAGGGCTTCCATTAATTATCCTCCCATGTTGTCACATTTCCAGTTACTTTATGACCTTGGCCTTGCGTTGTGTTCTAGAATCCCTGGAGGCATTAGTGCTGAACCGCGGAGTTCTCGGCTTAAAGATAAGAGAAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGTTAGAGAACAATGATCTGCTTCACATACTCGGAAAAGGGTCTGCTATAGTGCTTCTTCCCCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGTGTTGGATCACAACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATGCAATTCTGAGGGAATGTATTCCTCAAAAGATTTTATTTCTGATGACCTCATGTTCAACAGGAATCATGGAATCAAACAAGTAAAAGGTTTTTATTCTGTAAAAGAGAAGTTTGCTACCTTGTGTGAAGAGAACAGGGTTTCACCCTTCAGTCTGAATGGGAACATATACACTTCAAGTTCAAAAACACTGCAAAGTGACACTGAAAAAGAAACAGGTCAAGGAGATGGGTTGTCAGATCAGAGGCTATTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATACCTTATGTCAGCTGATTGTAGTTTCTTTAACTGA 1674 0.5054 MAGSEEVFPWLKSLPVAPEYRPTAAEFQDPIAYIFKIEKEASQYGICKIIPPVPPSPKKTAVANLTRSLPTFTTRQQQIGFCPRRPQPVRRPVWNSGHRYSLRDFETKAKAFDKTHLKKPPSPLELETLYWKATLDKPFSVEYANDMPGSAFSPLRSWRHYAVGDTAWNMRVVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEEVVRLHGYGGEINSLVTFAVLGEKTTVMSPEVFIGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKEAAIRRASINYPPMLSHFQLLYDLGLALCSRIPGGISAEPRSSRLKDKRKGEGETVIKELFVQDVLENNDLLHILGKGSAIVLLPRSSSDFSVCSKLRVGSQQLKVNPDFSLNVCNSEGMYSSKDFISDDLMFNRNHGIKQVKGFYSVKEKFATLCEENRVSPFSLNGNIYTSSSKTLQSDTEKETGQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFN 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01498 557 Pfam JmjC domain, hydroxylase 195 313 IPR003347 -
Pumo4g01498 557 Pfam jmjN domain 18 51 IPR003349 -
Pumo4g01498 557 SMART cupin_9 162 331 IPR003347 -
Pumo4g01498 557 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 538 - -
Pumo4g01498 557 ProSiteProfiles JmjC domain profile. 162 331 IPR003347 -
Pumo4g01498 557 FunFam Probable lysine-specific demethylase ELF6 10 335 - -
Pumo4g01498 557 Gene3D Cupin 10 335 - -
Pumo4g01498 557 SUPERFAMILY Clavaminate synthase-like 125 332 - -
Pumo4g01498 557 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Pumo4g01498 557 SMART JmjN_1 16 57 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01498 Pumo-Chr4 18954810 18957116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01498 137 548 C2H2 Transcription Factor Family AT5G04240 43.675 1.87e-103 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo4g01498 JmjC 6.4e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01498 - - lang:109362418 904.049