Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01495 ATGCATCAACACCATTATTATTGTTTCAACAACCCATTTTCAAGGGATTTCTCTTTGTCACTTTCCAAGATTTTCCTTGTTTTCATTTGCTCAGCTTTGTCGTTTCGCACGCATTCTGTGTGTCCATCATCAATGTTGGTTTGCACTGTTTCATGTGGGTTCTGGTTATGCAAGAGTGAGACAGTGATGGATGGTAGGAGGCATTCTGTTGATATTCCTATTTCCAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCATTGAGGGATCCATCAACTAACGGTGTTAGCAGACTCTCTCCTTTGATTGATGATGGAGATTGGGAAGATGGTTCTAGTAATGGGGTTTCTCTGAGTTTGAGGTTCCTGAATGCTTCTCATACATGTGATTCTGATGGTAATCGTCTTTTAAGATCAAGTAGTTTAGGTTTTAAGGGACAAAGAGAGCAGGACACTGCTGAGTTTGAATTGGACATGTTGAACTCTAAGATGAACTATTGTGGGATCTCTTGTCCCGAAGGGCAACAAGATGATGGACTAGTTTACTCTAATCCTAAGCAACAAGGTATCTCTGGAGATAAATCATCAAATGAAAGCTGTTGTAGCAACCATGAAGGTAGAGGGTTGGATTTGGTTTCCATCATGCCTCCTTGTAATCATTTGAAGGATGGAGAGTCATGCTATTTGTCAACTGCAATAAGAGTTGAACACTCAAAGTCAGCAAGAAAATCCCTACGCAAGAATCAAGTGAAACCATCGGAAGTGATTGGTGATGTTGCAAGCCATGTAGGAAGTCAACAATGCCGCTCTGTTTGCTCAGCTCGTAGCGCCTTGGAACATATCACTCAAGATGTTGATGTTTTAGATAATCACCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAATTGAAGGCCTTCCCTTGATATTGCAGCACGTAAATGAGACGGATCTCAATGGACATAGAAACATGAGACACATTGGTGGTGAAATAAGTCCAACTTTGGAAACTCCTAGAAGTTTATCTATGAAATTCAGGCCAAAATCTTTCAGTGATTTGGTTGGACAAAATTTGATAGGAAAGTCTCTTTTGGGTGCTATCTCTACAGGAAGGATATCATCATTTTATCTCTTCCATGGACCACGCGGCACAGGCAAGACCTCTGCATCTAGAATATTTGCTGCTGCACTGAATTGCCTCTCCCATGTGGAGCAAAAGCCGTGTGGTCTGTGTAGAGAATGTGTTTTGTTCTTTTCTGGAAGAATTAAAAATGTAAAGGAAGTTGATTCTTTGAGAATCAATCGTACAGAAAAGGTTATATCCCTTGTTAAGCATGCATGCATTCCTCCAGTTTCCTCACGTTTTAAGGTGTTCATTGTTGATGAGTGCCAGTTATTGCACGGGGAAACATGGGCGTGTCTTTTGAATAGCCTAGAAAATGTTTCACCACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGGAGTGCAGTTTCCCGGGCTCAAAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGCCAGAAGATTGGAAAAGATTTGTGTTGAAGAAGGTCTTGAATCTGAACAAGCTGCTTTGAACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCTGAAACTATGCTTGATCAATTGAGTTTGCTTGGTAAAAAGATTACTATTTCCTTAGTCCACGAGCTTACTGGGGTTATTTCTGATGATGAATTGCTTGATTTGTTGGACCTGGCTTTATCATCTGACACTTCAAACACAGTTATAAGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTTGGTGGTTCTGAAATCAGAACAAGATTCTATAGTAGATATACCTCGGAAGCAGACCTGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAAACAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTGAGCTCCGTAGAATATTCATCTGTGGATACAAATGATACAAAGTTGTGTGCACAAGCTGTGTCCAATAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGGGACAGCTTGGAGCATCTTGCTACAACAGGTCAATGTGATGACAAGTCATATACATTAGGATTAGGTGTACCGGAGGATCACAAAGGAACATTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCAGGCTCAAAACTTTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGCCATGCAGTTGCCGAGTTGGAGTTCCACCATCGTGGCTATGTAAGTAGGGCTGAGAAGTCATGGAAGATGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAACCTTGAGCTCAGAATCAATTATGTACCTTCTTGTACTTCGGATTCTATGTATGCTAAATTGAAGAGGACATCTTTCAATTTCTTTGGTTGTTCTCGTAGAATTCGTTGGAAATCTTTATCATCTAATGAACAAGGAAGCGAATCAGACTATGCTGATTACACTTCTCAAAAGCCCATGATGAAGGATCAAACTCTAACTTGTTCCTCTGATTGTGAAACTCGGGTGCCACCATTTGAGTCCTACCATGGAATGCAGGTTGTAACAACTTTGAGAAGTAGTGAAGGAAATTTGCTAAGCTCAGGGAAAATGTTTTTGAATAGGCCAGATCAAGAGACTCCAAGAATTTCATGTTCTAGAGTTGATTCTCTCAAGGAAGAGGGATGCAATTATGACCATCTAGCTTCATCAACCCTTGATTTAGATAATCAGTCTGACTGTTTTCCCCGAACCCGCTGGCTGCATAAAAAGTTATGTTCTTCATATGCATCACAACAGAAGAATATTGTTTTATCTATCCCCAAGTTCAAATGTTCTGAGACTTATAGATATGATCTGGAACCCTGTGTCTTTTCCCACAGCTCTAACAACTGCACCAAAGCCACTGAGGAAAAGTAG 3108 0.4041 MHQHHYYCFNNPFSRDFSLSLSKIFLVFICSALSFRTHSVCPSSMLVCTVSCGFWLCKSETVMDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSRLSPLIDDGDWEDGSSNGVSLSLRFLNASHTCDSDGNRLLRSSSLGFKGQREQDTAEFELDMLNSKMNYCGISCPEGQQDDGLVYSNPKQQGISGDKSSNESCCSNHEGRGLDLVSIMPPCNHLKDGESCYLSTAIRVEHSKSARKSLRKNQVKPSEVIGDVASHVGSQQCRSVCSARSALEHITQDVDVLDNHHGCGLRSCWSKSPRFRESNHYSEIEGLPLILQHVNETDLNGHRNMRHIGGEISPTLETPRSLSMKFRPKSFSDLVGQNLIGKSLLGAISTGRISSFYLFHGPRGTGKTSASRIFAAALNCLSHVEQKPCGLCRECVLFFSGRIKNVKEVDSLRINRTEKVISLVKHACIPPVSSRFKVFIVDECQLLHGETWACLLNSLENVSPHVVFVMITPDLDKLPRSAVSRAQRYHFAKIKDADIARRLEKICVEEGLESEQAALNFIAARSCGSLRDAETMLDQLSLLGKKITISLVHELTGVISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILAGKCELGGSEIRTRFYSRYTSEADLQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVEYSSVDTNDTKLCAQAVSNRDGDICSTSPKGDSLEHLATTGQCDDKSYTLGLGVPEDHKGTLDSIWYKATEMCQSSRLKTFLRKQGKLSSVCINQGHAVAELEFHHRGYVSRAEKSWKMIASSLQFILGCNLELRINYVPSCTSDSMYAKLKRTSFNFFGCSRRIRWKSLSSNEQGSESDYADYTSQKPMMKDQTLTCSSDCETRVPPFESYHGMQVVTTLRSSEGNLLSSGKMFLNRPDQETPRISCSRVDSLKEEGCNYDHLASSTLDLDNQSDCFPRTRWLHKKLCSSYASQQKNIVLSIPKFKCSETYRYDLEPCVFSHSSNNCTKATEEK 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01495 1035 Gene3D - 525 587 - -
Pumo4g01495 1035 NCBIfam DNA polymerase III subunit gamma/tau 351 697 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pumo4g01495 1035 Pfam DNA polymerase III, delta subunit 368 524 - -
Pumo4g01495 1035 Gene3D - 588 701 - -
Pumo4g01495 1035 FunFam DNA polymerase III subunit gamma/tau 525 587 - -
Pumo4g01495 1035 FunFam Protein STICHEL-like 1 isoform C 588 701 - -
Pumo4g01495 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 574 IPR027417 -
Pumo4g01495 1035 SUPERFAMILY post-AAA+ oligomerization domain-like 594 695 IPR008921 GO:0003677|GO:0006260
Pumo4g01495 1035 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 352 774 - -
Pumo4g01495 1035 Gene3D - 345 522 IPR027417 -
Pumo4g01495 1035 CDD HLD_clamp_pol_III_gamma_tau 524 587 IPR045085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01495 Pumo-Chr4 18930399 18935372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01495 342 636 Core DNA Replication Machinery Family AT1G21690 24.415 8.03e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01495 - - gmx:100812040 1203.35