Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01494 ATGGCCACCACTTCCCTCTCTCTCCTCTTCCTCTTCTTCTCTCTCCTCACCCCAGCCCTCATTTCCTCTTCCCCTGTTCAAGACCCTGAATTAGTGGCCCAAGAAGTTAACAGGCAAATCAATGCCTCTGTAGCTAGGAGGAATTTGGGGTACTTGTCCTGTGGGACAGGCAACCCCATTGATGATTGTTGGAGGTGTGACCCTAACTGGGAGAAGAACAGGCAGAGGCTAGCGGATTGTGCAATTGGTTTCGGCAAAAACGCCATTGGAGGAAAGAACGGAAAAATCTACGTGGTCACCGATTCCGGCGACGACGATCCCGTGACCCCTAAGCCGGGGACTCTCCGGTACGCAGTGATTCAAGACGAGCCACTTTGGATCATATTCGCAAGAGACATGGTGATTAAACTCAAGGAAGAGCTTATCATGAATTCCTTCAAAACCATTGATGGAAGAGGTGCTAGCGTGCACATTGCTGGTGGTCCATGCATTACTATACAGTATGTGACCAACGTTATAATCCACGGGATTAATATTCACGACTGTAAGCAAGGTGGGAATGCTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGGACCGTATCGGACGGTGATGGCGTGTCCATCTTTGGAGGAAGCCACATATGGGTTGACCATTGCTCCTTGTCTAACTGCAATGATGGGTTAGTGGATGCCATTCATGGGTCTACTGCGATTACCATCTCCAACAATTACATGACTCACCATGACAAGGTCATGCTTTTGGGCCACAGCGACTCCTACACTCAGGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGTGAAGGGCTTGTTCAGAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCTACCATCAATAGCCAAGGCAACAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAAGGGGTGGAATTGGAGGTCAGAAGGGGACCTATTGGTAAACGGTGCGTTTTTCACAGCATCGGGGGCTGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCTTGAGTGCAAGGCCATCTTCGCTAGTGGGGTCCATAACGACTGGTGCGGGTGCACTCAACTGTAGGAAGGGTTCCCGTTGCTGA 1221 0.5004 MATTSLSLLFLFFSLLTPALISSSPVQDPELVAQEVNRQINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLVDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01494 406 Gene3D - 57 399 IPR012334 -
Pumo4g01494 406 Pfam Pectate lyase 139 323 IPR002022 -
Pumo4g01494 406 SUPERFAMILY Pectin lyase-like 35 401 IPR011050 -
Pumo4g01494 406 FunFam Pectate lyase 57 399 - -
Pumo4g01494 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Pumo4g01494 406 SMART amb_all 132 329 IPR002022 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Pumo4g01494 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01494 Pumo-Chr4 18901665 18903750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01494 1 406 Polysaccharide Lyase AT5G63180 80.196 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01494 K01728 - gmx:100101868 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01494 4 18901665 18903750 Pumo10g01937 10 25555539 25558259 ECH
Pumo1g00405 1 5743404 5752949 Pumo4g01494 4 18901665 18903750 ECH
Pumo10g01937 10 25555539 25558259 Pumo4g01494 4 18901665 18903750 ECH
Pumo4g01494 4 18901665 18903750 Pumo4g01494 4 18901665 18903750 ECH
Pumo4g01494 4 18901665 18903750 Pumo10g01937 10 25555539 25558259 PCT