Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01493 ATGGCCCCTCAAACCATATCCATTGACTACCTCACCACCCGCCTCTTACCCGAACCCGATGTCTTCATTCACACTTCCCACGGAACACGCATTCCAGCCCACGCAGGCATTCTGGCGTCCATGTCGCCGGTTTTGGAGAACTTCATAGATCGGCCACGTAAGCATCGGAGCTCCGAAAGAATAATCCAAATCCACGGCGTCCCCTGCGACGCCGTCACCGCCTTCGTCGGATTCCTCTACTCCTCCAGGTGCACGGAGGAGGAGATGGACAAGTACGGGATGCACCTCCTCGCATTGTCGCACGTGTACTTGGTGCCGCAGCTGAAGCAGAGGTGCATCAAAGGTTTGACCCAGCGCTTGACCACGGACAACGTCGTCGACGTGCTGCAACTCGCGCGTCTCTGCGACGCGCCGGATCTCCACCTCCGCTGCATGAAGCTCCTCGCCAATAACTTCAAAGCGGTCGAAGCAACCGAGGGCTGGAAGTTCCTCGTCAAGCACGACCCCTGGCTCGAACTCGACATTCTCCGCTTCATCGACGAACACGAAACAAGGAAAAAGAAATCGAGGAGGCACAGGGAGGAACAAGGGCTGTACGCAGAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGCACCCACGTTGGACCGTACGATGCGGAGGTGAAGAGAGAGATGGCGCCGTGTGGCAGATTCCCCACGTGTGAGGGTCTTCAGGTTCTGATCCGCCACTTTGCCACGTGCGACAGGAAGGTGAGGGGCGGGTGCCTGCGCTGCAAGCGAATGTGGCAGCTCTTTCGACTTCATTCTTATGTTTGTCACCAGACGGATTCCTGCAAGGTTCCTTTTTGCAGGCAATTTCAATTGAGAATGCAGAAAGAGAAAAGGAAAGATGATCCAAAGTGGAAACTACTAGCGAGGAAGGTGGCCTCAGCCAAAGTCATGTCTTCATTGTCTCTGCCAAAGAGGAAGCGAGATGAAGAAATAAGAGAGACGATAAACAATCCCGGGATTAGAAGTTTTAAATTACTATGA 1050 0.5438 MAPQTISIDYLTTRLLPEPDVFIHTSHGTRIPAHAGILASMSPVLENFIDRPRKHRSSERIIQIHGVPCDAVTAFVGFLYSSRCTEEEMDKYGMHLLALSHVYLVPQLKQRCIKGLTQRLTTDNVVDVLQLARLCDAPDLHLRCMKLLANNFKAVEATEGWKFLVKHDPWLELDILRFIDEHETRKKKSRRHREEQGLYAELSEAMECLEHICTEGCTHVGPYDAEVKREMAPCGRFPTCEGLQVLIRHFATCDRKVRGGCLRCKRMWQLFRLHSYVCHQTDSCKVPFCRQFQLRMQKEKRKDDPKWKLLARKVASAKVMSSLSLPKRKRDEEIRETINNPGIRSFKLL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01493 349 Pfam TAZ zinc finger 203 289 IPR000197 -
Pumo4g01493 349 SMART BTB_4 19 120 IPR000210 GO:0005515
Pumo4g01493 349 Gene3D - 121 192 - -
Pumo4g01493 349 ProSiteProfiles BTB domain profile. 19 88 IPR000210 GO:0005515
Pumo4g01493 349 FunFam BTB/POZ and TAZ domain-containing protein 2 192 318 - -
Pumo4g01493 349 SUPERFAMILY POZ domain 20 150 IPR011333 -
Pumo4g01493 349 Gene3D Potassium Channel Kv1.1; Chain A 16 120 IPR011333 -
Pumo4g01493 349 FunFam BTB/POZ and TAZ domain-containing protein 2 121 191 - -
Pumo4g01493 349 SUPERFAMILY TAZ domain 194 293 IPR035898 -
Pumo4g01493 349 Pfam BTB/POZ domain 19 119 IPR000210 GO:0005515
Pumo4g01493 349 CDD BACK 121 168 - -
Pumo4g01493 349 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 17 332 IPR044513 -
Pumo4g01493 349 Gene3D TAZ domain 193 317 IPR035898 -
Pumo4g01493 349 SMART TAZ_2 196 290 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01493 Pumo-Chr4 18852786 18856080 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Pumo4g01493 BTB 1.7e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01493 - - gmx:100807120 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01493 4 18852786 18856080 Pumo4g01493 4 18852786 18856080 ECH
Pumo4g01493 4 18852786 18856080 Pumo10g01940 10 25582178 25585301 PCT