Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01485 ATGTCTCTCACAACCGTGCCTGCGTTCAAGTCCCTCACAATGGCAGAATCGTGCCTTCTATCTCTCCCTTCCCTCTTCTACACCAAAAACAAATCCCCTTCTCTCTCAATTCCCACTAAGCCCATCAACCTCCAATTCCCATGCTCCAATTCTTCACTCTTTCCGCTTACCACCAAGACAACCCGCCAGTCCTCGCTGCTCACATTCGTGGCTCAGACATCGGATTGGGCCAAAGAAGAAGAAGAGGCCGCGTGGGAGAACCAAGGCGACACCGCGTGGGGAACTGAAGAAGGTGGCGATGACGGGGAGGAACTAACTGAGGGGGGTTTCGCTGAACCAACTGAAGAAGTTAAGATCTTCGTTGGGAACTTGCCTTTCGATGTTGACAGCGAGAAATTGGCTTCGCTTTTTGAGCAGGCTGGCACCGTTGAGGTTGCTGAGGTTATTTATAATAGGGCCACTGACCGGAGTCGCGGGTTTGGATTTGTTACCATGAATACACTTGAAGAGCTTGAGAAGGCTGTCCAGATGTTCAGTGGTTATGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCGCACCACGCCCACCACGATCCTTTAGTTCTGGTTTAAGAGTCTACGTTGGCAACTTGCCTTGGGATGTTGACAATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACAGAGAGACTGGTCGATCACGCGGTTTTGGCTTTGTCACAATGTCTAGTGAGACTGATATGAATGATGCAATTGCTGCCCTTGATGGTCAGAGTTTGGATGGGAGGGCAATCAGAGTGAATGTTGCAGAGGAAAGGCCTAGACGCTCCTTTTGA 897 0.4983 MSLTTVPAFKSLTMAESCLLSLPSLFYTKNKSPSLSIPTKPINLQFPCSNSSLFPLTTKTTRQSSLLTFVAQTSDWAKEEEEAAWENQGDTAWGTEEGGDDGEELTEGGFAEPTEEVKIFVGNLPFDVDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMNTLEELEKAVQMFSGYELNGRVLTVNKAAPKGAQPERAPRPPRSFSSGLRVYVGNLPWDVDNARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAEERPRRSF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01485 298 FunFam 31 kDa ribonucleoprotein, chloroplastic 204 298 - -
Pumo4g01485 298 Gene3D - 201 297 IPR012677 -
Pumo4g01485 298 Gene3D - 70 200 IPR012677 -
Pumo4g01485 298 PANTHER OS02G0815200 PROTEIN 39 296 - -
Pumo4g01485 298 SUPERFAMILY RNA-binding domain, RBD 206 296 IPR035979 GO:0003676
Pumo4g01485 298 CDD RRM2_NsCP33_like 215 290 - -
Pumo4g01485 298 SUPERFAMILY RNA-binding domain, RBD 114 209 IPR035979 GO:0003676
Pumo4g01485 298 SMART rrm1_1 215 288 IPR000504 GO:0003723
Pumo4g01485 298 SMART rrm1_1 118 191 IPR000504 GO:0003723
Pumo4g01485 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Pumo4g01485 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 188 IPR000504 GO:0003723
Pumo4g01485 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Pumo4g01485 298 MobiDBLite consensus disorder prediction 81 108 - -
Pumo4g01485 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01485 Pumo-Chr4 18800224 18802651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01485 119 296 Eukaryotic Initiation Factors Gene Family AT3G16380 35.294 2.48e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01485 - - gmx:100804984 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01485 4 18800224 18802651 Pumo10g01948 10 25679736 25682680 ECH
Pumo4g01485 4 18800224 18802651 Pumo4g01485 4 18800224 18802651 ECH
Pumo4g01485 4 18800224 18802651 Pumo10g01948 10 25679736 25682680 PCT