Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01479 ATGGAGATGGAACGCGTCTTCGAATTTCCCCACACTCACATGGATCGGCGCCCTAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTATGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTAAGCCAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCACGATTTGCGAATGATTCATACTGACTTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGGGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGGTATATATGCATACTGTAAATGCTGTGGAAAGAATGCCTGCCTTAACTGTGTTTGCATGTTGGCACTTGACAATCATGATCACCGGCTATATGCCTGCTAA 981 0.4241 MEMERVFEFPHTHMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGTISSYAPSRGPSEHTTSSLFVKPVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGIYAYCKCCGKNACLNCVCMLALDNHDHRLYAC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01479 326 ProSiteProfiles Protein kinase domain profile. 98 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01479 326 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Pumo4g01479 326 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 296 - -
Pumo4g01479 326 SUPERFAMILY Protein kinase-like (PK-like) 85 298 IPR011009 -
Pumo4g01479 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Pumo4g01479 326 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Pumo4g01479 326 Gene3D Transferase(Phosphotransferase) domain 1 152 295 - -
Pumo4g01479 326 Pfam Protein kinase domain 98 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01479 326 SMART serkin_6 98 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01479 Pumo-Chr4 18744844 18747838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01479 84 233 EF-hand Containing Proteins AT5G22840 36.943 1.36e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Pumo4g01479 Pkinase 8.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01479 K08287 - gmx:100804452 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01479 4 18744844 18747838 Pumo4g01479 4 18744844 18747838 ECH