Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01465 ATGGCAATTTCTTCGGCAGCAGCAGCAGCAACAACCTCAAAACTCGCATACCCTAATCATGTCTACTCTTCTCCTTCACCCTCCTCCAATTGCCTCTTCCTCAAAGGCCACACACCCTCCACAACACACCTCTCCTCTTCCTTCATACACCCCTCCACAATCCTCCACCTTGCCCCCACCCCCACCCCCACCCCCACCCCCCGCCGCTCCCTCACCGTCCGCGCCGCACGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTCAACATCGGCACCATCGGCCACGTGGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCAACGGCAACAGCGCCCCCAAAAAATACGACGAAATCGACGCCGCCCCCGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTCGAATACGAGACCGAGAACCGCCACTACGCCCACGTCGACTGCCCTGGCCACGCCGACTACGTCAAAAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCAATGCCCCAAACAAAAGAACACATCCTCTTGGCCAAACAAGTCGGCGTCCCCAACATAGTTGTCTTCTCAACAAACAGGACCAGGTTGATGACGACGAGCTTCTTCAATTAG 669 0.6099 MAISSAAAAATTSKLAYPNHVYSSPSPSSNCLFLKGHTPSTTHLSSSFIHPSTILHLAPTPTPTPTPRRSLTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASNGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVVFSTNRTRLMTTSFFN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01465 222 NCBIfam small GTP-binding protein domain 87 209 IPR005225 GO:0005525
Pumo4g01465 222 FunFam Uncharacterized protein 95 205 - -
Pumo4g01465 222 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 125 140 IPR031157 -
Pumo4g01465 222 Gene3D - 75 212 IPR027417 -
Pumo4g01465 222 Pfam Elongation factor Tu GTP binding domain 84 208 IPR000795 GO:0003924|GO:0005525
Pumo4g01465 222 PRINTS GTP-binding elongation factor signature 132 140 IPR000795 GO:0003924|GO:0005525
Pumo4g01465 222 PRINTS GTP-binding elongation factor signature 152 162 IPR000795 GO:0003924|GO:0005525
Pumo4g01465 222 PRINTS GTP-binding elongation factor signature 88 101 IPR000795 GO:0003924|GO:0005525
Pumo4g01465 222 PRINTS GTP-binding elongation factor signature 168 179 IPR000795 GO:0003924|GO:0005525
Pumo4g01465 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 209 IPR027417 -
Pumo4g01465 222 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 84 222 IPR000795 GO:0003924|GO:0005525
Pumo4g01465 222 PANTHER ELONGATION FACTOR TU-RELATED 73 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01465 Pumo-Chr4 18545190 18545858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01465 82 206 Eukaryotic Initiation Factors Gene Family AT1G07930 34.694 8.35e-23 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01465 K02358 - gmx:100791320 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01465 4 18545190 18545858 Pumo4g01465 4 18545190 18545858 ECH
Pumo4g01465 4 18545190 18545858 Pumo10g01966 10 25935143 25936273 PCT