Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01456 ATGGGATCCAAACCCCTAGATAATAACAACAATAATACTATTAAGTTCCTCTATAGCTACGGCGGCAAGATCCTTCCTCGCCAAACCGACGGCAAGCTCCGATACCACGGCGGCCACACCAGAGTCCTTTCCCTCCATCCTTCCACTTCTTTCTCAGAGCTGATGAAAAAGCTTAACGAGTTGTGCGGTTCGCCGGTCACACTTAAGTGTCCATTGCCGAACGGAGACTTGGACACCTTGATTTCCGTCACCAACGACGAAGATTTGGCTAATATAATTCACTTATACGATCGAGCTTCTTCGTCGTTACCTCAGCAGTTGAAGATCAGAGCCATTCTTTCGCCCCCGAAGAAATCGTCTCCTTCTTCCAGCGCCGCTCACTCTCCGTCCGGTTCGTCTCACTCCTCCGCCGATTCCCTGCCGTGCTCGGCGGCGAATCGGTTCGTCCGCCGGAACTGCTCACCGGCGCCGGTTGCGTATCCTATTGGCGTCCGTAACGGAGCGGCGAAAGGCTGTTGGTACACGAGGCAGTTGGACGGAAGCCCAAGATTCCCTTACCGTGGGGCTCACTCGAATAATTATTGCCACTGA 591 0.533 MGSKPLDNNNNNTIKFLYSYGGKILPRQTDGKLRYHGGHTRVLSLHPSTSFSELMKKLNELCGSPVTLKCPLPNGDLDTLISVTNDEDLANIIHLYDRASSSLPQQLKIRAILSPPKKSSPSSSAAHSPSGSSHSSADSLPCSAANRFVRRNCSPAPVAYPIGVRNGAAKGCWYTRQLDGSPRFPYRGAHSNNYCH 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01456 196 Pfam PB1 domain 29 105 IPR000270 GO:0005515
Pumo4g01456 196 Gene3D - 32 113 - -
Pumo4g01456 196 CDD PB1_UP2 19 113 - -
Pumo4g01456 196 PANTHER OS05G0427100 PROTEIN-RELATED 12 154 - -
Pumo4g01456 196 MobiDBLite consensus disorder prediction 116 138 - -
Pumo4g01456 196 SUPERFAMILY CAD & PB1 domains 30 122 - -
Pumo4g01456 196 SMART PB1_new 28 114 IPR000270 GO:0005515
Pumo4g01456 196 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01456 Pumo-Chr4 18477132 18478186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01456 13 128 MAP Kinase Kinase Kinase AT1G04700 45.690 1.46e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01456 - - gmx:100815502 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01456 4 18477132 18478186 Pumo4g01456 4 18477132 18478186 ECH
Pumo4g01456 4 18477132 18478186 Pumo10g01980 10 26075920 26078154 PCT