Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01452 ATGGTCGTGGGCGGTGGTGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGGGAGAGGAGGTAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAATAACATTGCACTTCCTAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTGGAGGGCCCTGCGGTAAGGGCCATGTCTGAGCAAGAAGTTATGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGCCATGATGTGCCAAAGCCTGTACGGATGTTCCACGAGGCGAATTTCCCTGATTGCTGCCTTGAGGTCATTGCTAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGTTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTCCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCCCGAACAAACATTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGGGAGCTTAAAAGAGGCGTTGAGATTGTTATTGCTACACCTGGTCGTTTAATAGATATGTTGGAAGCTCAGCTACACAAACCTGCACAGAGTGACTTACTTAGTGCTGGATGA 729 0.4883 MVVGGGGRAGAHGFRGSGRGGRHGGGSSRDDLNNIALPKQDFKNLVPFEKNFYVEGPAVRAMSEQEVMHYRASREITVQGHDVPKPVRMFHEANFPDCCLEVIANLGFAEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQLHKPAQSDLLSAG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01452 242 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 116 IPR014014 GO:0003724
Pumo4g01452 242 Gene3D - 53 239 IPR027417 -
Pumo4g01452 242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 242 IPR014001 -
Pumo4g01452 242 SMART ultradead3 107 242 IPR014001 -
Pumo4g01452 242 Pfam DEAD/DEAH box helicase 112 229 IPR011545 GO:0003676|GO:0005524
Pumo4g01452 242 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 67 230 - -
Pumo4g01452 242 MobiDBLite consensus disorder prediction 1 34 - -
Pumo4g01452 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 231 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01452 Pumo-Chr4 18424877 18425894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01452 85 227 Eukaryotic Initiation Factors Gene Family AT3G19760 33.566 6.94e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01452 K12823 - gmx:100777610 404.445