Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01451 ATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGGCCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATACAAGGTAATTGTTGGGTCACCATACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATACAATAGATTAATCAGACTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATTAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATATACCTTTTTTACACATGCCAATGCCAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCATTGTCTGCTTTGGTTCGGTCAGCTGGTTCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGAGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGACTACAGTAGCTTGATAATAGATGATCAAATATTTTCTTACAGTCTTTATCCTTCATTTGACAAGGGAAGAAGAAAGAAAATAGAAGAAAAGAAGATGGAATGA 876 0.4178 MLDMGFEPQIRKIVGQIRPDRQTLLWSATWPREVETLARQFLRNPYKVIVGSPYLKANQSINQVVEVVTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRSRGRGGYGNRGLTSGSNAIPLDYSSLIIDDQIFSYSLYPSFDKGRRKKIEEKKME 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01451 291 SMART helicmild6 101 182 IPR001650 -
Pumo4g01451 291 Pfam Helicase conserved C-terminal domain 72 182 IPR001650 -
Pumo4g01451 291 CDD SF2_C_DEAD 61 191 - -
Pumo4g01451 291 FunFam ATP-dependent RNA helicase RhlB 51 224 - -
Pumo4g01451 291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 219 IPR027417 -
Pumo4g01451 291 Gene3D - 52 224 IPR027417 -
Pumo4g01451 291 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 76 221 IPR001650 -
Pumo4g01451 291 Gene3D - 1 51 IPR027417 -
Pumo4g01451 291 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 48 IPR014001 -
Pumo4g01451 291 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01451 Pumo-Chr4 18421305 18424866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01451 1 202 Eukaryotic Initiation Factors Gene Family AT3G19760 38.424 2.25e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01451 K12823 - gmx:100777610 456.062