Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01447 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAAAAGCTATTCAATTACATAACCAGATTTGGAGTTGGATGCTGGAGTTCGGTTCCCAAACTAGCCGGACTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCACAGCAGGAGGAGGATCTTATAATCAGCCTTCATGAAGTTCTTGGAAACAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAAAACTTCTGGAATTCATGTTTAAAGAAGAAGCTTCTGAAGCAAGGGATTGACCCAACTACACACAAGCCCCTTACAGAAGCTCATGTAAAGGAAGAAAAGAAAATCACAGAGACATCACCTATGCAAACACCATTGTCTCAAGGCCCTTCAATTCCATTAACCTTTCCTTCATCACAGGGAACACCACTACTAATAAGTGATTCCAATTACTATGATGGAGGACTAACAGAAGCTTCAAGAGAAATTTTCATGAGTAAGCCAGCATTGGACCCTTTATCCTTCTATGATTTTCCAATGGGTGTTGCACAGTCTGGTTTTAACTTACCTATGAGTCAGTATCAGACAAGCCTTAAAGCATCTGATCAGAGTCCTTTTGGACCCAATTCAAGCTATGTATTCTCTTCAATGCCAAGTCTAACCAATTCTGATCATGGGAACGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATCAGTTCATTGTTCATGAATGACCAGGTGAAAGAAAGTTCCAGCAATAGCTCAAACATGAGCACCATTTACCCTGGAGGAGGGTGTCATATCAGCAGCATGATGGAAAATGCAGGGTTCTCGTGGGAGGGTGACAACAAATTCGACCCTTTGTTTCAGTTCCAAGTAAATGCCACAAAATCAGAGGATTTTAAGACAAGTTCATGGGAAGAAGGGCAGCTGCAGACTCAAAATTCCATAGATTTCACTAGCTTTCCGTTAACGTCACTTTCAGAAGATCTAACAGGAGCAAATTTTGATGTATTCCATCATATATGA 1113 0.4115 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAHVKEEKKITETSPMQTPLSQGPSIPLTFPSSQGTPLLISDSNYYDGGLTEASREIFMSKPALDPLSFYDFPMGVAQSGFNLPMSQYQTSLKASDQSPFGPNSSYVFSSMPSLTNSDHGNVSVTEFSDNNSASKISSLFMNDQVKESSSNSSNMSTIYPGGGCHISSMMENAGFSWEGDNKFDPLFQFQVNATKSEDFKTSSWEEGQLQTQNSIDFTSFPLTSLSEDLTGANFDVFHHI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01447 370 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo4g01447 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo4g01447 370 CDD SANT 70 109 IPR001005 -
Pumo4g01447 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo4g01447 370 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo4g01447 370 FunFam Transcription factor MYB86 69 137 - -
Pumo4g01447 370 Gene3D - 68 144 - -
Pumo4g01447 370 SMART sant 66 114 IPR001005 -
Pumo4g01447 370 SMART sant 13 63 IPR001005 -
Pumo4g01447 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo4g01447 370 CDD SANT 17 61 IPR001005 -
Pumo4g01447 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo4g01447 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo4g01447 370 FunFam MYB transcription factor 11 67 - -
Pumo4g01447 370 PANTHER MYB DOMAIN PROTEIN 55 1 301 - -
Pumo4g01447 370 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01447 Pumo-Chr4 18381230 18382898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01447 1 147 MYB Transcription Factor Family AT4G01680 78.231 1.32e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo4g01447 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01447 K09422 - gmx:100811140 731.48