Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01444 ATGGCATCATCCAGCTCTTACAACTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAATTCGCAAACGTGCACAAAATATTTGGTGCTAGCAATGTGACCAAACTCCTGAACGAACTGCTCCCTCACCAGAGGGAGGATGCAGTGAACTCCCTCGCCTATGAGGCAGAGGCACGCGTGAGGGACCCAGTTTATGGGTGTGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAACTTGATGCTGCAAACGCTGATCTGCTACGCTATTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCACCAAGTGCCCCAAAGGCAGTTTAGTGCAAGATTTGGAAACGAAGCAAGTGGGTTTTATCGGCAATCTACTGCTACTGCTTATTCCTTTCCTTATGCTCTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTGAGGGAGGAGGAGGAGGAGGTAATTTGTGA 561 0.4884 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLASFHQVPQRQFSARFGNEASGFYRQSTATAYSFPYALPWTDTSSEDISEGGGGGGNL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01444 186 Coils Coil 89 109 - -
Pumo4g01444 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 134 - -
Pumo4g01444 186 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pumo4g01444 186 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01444 Pumo-Chr4 18319970 18320530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01444 2 186 AS2 family AT5G63090 61.780 1.69e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo4g01444 LOB 2.8e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01444 4 18319970 18320530 Pumo4g01444 4 18319970 18320530 ECH