Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01438 ATGCCTGTAAATCTATGGACCCTCTTCTTCTTATGCATTTCCCTTCTACTTCCATTCCATTTTCTCATAGCTGCTGCAGTGAACCAACAAGGGGAAGCTCTTCTATCATGGAAGAGAACCCTGAATGGATCCCTGGAGGTATTGAGTAACTGGGACCCAGTTCAAGACACCCCATGTAGCTGGTATGGAGTGAGTTGTAACACAAAGAACGAAGTAGCACAATTGGATCTGAGGTATGTGGATTTGCTTGGAAGACTTCCCACTAATTTCACCTCATTGCTTTCCTTAACCACTCTGATCTTAACCGGAACCAACCTCACTGGTTCAATCCCGAAAGAAATAGGTGAACTTGTGGAACTCAGCTACTTGGACTTGAGTGACAATGCCTTGAGTGGTGAAATCCCAAGTGAGCTATGTTACTTGCCCAAACTCGAGGAACTCCATCTCAACTCCAACGACCTCGTGGGGTTCATTCCAGTTGCAATTGGGAACCTCACAAAGTTGCAGAAGCTGATCCTCTACGACAATCAACTCAGTGGTGAAGTTCCCAGCACCATCGGCAACCTTCAGAGCCTTCAAGTGATAAGAGCAGGAGGAAACAAGAACCTGGAAGGTCCTCTACCACAAGAAATTGGCAACTGTTCCAGTTTGGCCATGTTGGGTCTTGCTGAAACAAGCCTCTCAGGTTCTCTGCCACCAACTCTCGGCCTTTTGAAGAACCTTGAAACCATTGCCATTTACACTTCCCTACTCTCCGGTGAAATACCACCTGAACTTGGGGACTGCACAGGGCTCCAAAACATTTATCTTTACGAGAACTCCATCACGGGATCCATACCAAGCAAGTTGGGAAACCTTAAGAACCTCGAAAACCTTCTCCTGTGGCAGAACAACCTTGTTGGTACCATCCCTCCAGAGATTGGAAACTGCGAGCAGTTGTCAGTGATTGACGTGTCAATGAACTCACTAACCGGAAGCATCCCCAAGACTTTCGGGAACTTGACATCACTGCAAGAGCTTCAACTCAGTGTGAACCAGATTTCAGGGGAGATTCCGGGGGAACTGGGCAAGTGTCAGCAACTCACGCATGTAGAGCTTGACAACAATCTCATCACGGGTACCATACCTTCCGAATTAGGAAACCTTGCGAATCTAACGCTGTTGTTCTTATGGCACAACAAGCTGCAAGGTAACATTCCCTCTTCCCTTACCAATTGTCAAAACCTAGAGGCTATTGATCTGTCGCAGAATGGATTAACGGGTCCCATACCCAAGGGGATATTCCAGCTCAAGCATCTCAACAAGCTCTTGCTCCTCTCCAACAATCTCTCAGGGAAACTCCCTTCTGAGATTGGGAACTGTTCCTCCCTTATTCGATTCCGAGCCAACGACAACAACATCACCGGGAACATTCCCTCGCAGATTGGGAATCTCAATAATTTGAATTTCCTAGACCTAGGGAACAATCGGATTTCTGGAGTTATCCCGGAGGAGATCTCCGGATGCCGGAATCTCGCTTTTCTGGACATGCATTCCAACTTCATCGCCGGAAATTTGCCGGAAAGTTTGAGCCGGCTTAATTCGCTGCAGTTTCTCGATGTCTCCGATAACATGATCGAAGGTACACTAAACCCTACCCTCGGCGAACTCGCGGCACTCTCCAAGCTCGTTCTCGCGAAGAATCGAATCTCCGGCTCGATTCCGAGTCAACTCGGTTCTTGTTCCAAGCTGCAACTGCTGGATCTCAGCAGCAACAACCTCTCCGGCGAAATCCCCGGCAGCATCGGCAACATTCCGGCGCTGGAAATCGCTCTGAATCTGAGCCTGAACCAGCTCTCCGGCGAGATCCCTCAGGAGTTTTCCGGATTGACGAAGCTCGGAGTGTTGGACATATCTCACAACGTTCTCGGCGGGAACCTTCAATATCTCGCGGGGCTGCAAAATCTCGTGGTGCTGAACATCTCGTGCAACAAATTCTCGGGACGCGTTCCGGACACGCCTTTCTTCGCGAAGCTGCCGCTGAGCGTGCTGGCGGGGAACCCGGCGTTGTGCTTCGCAGGCAACGAGTGCGGCGGCGACGGCGGCGGGAGGTCGGGGCGGCGGGCGAGGGTGGCGCGCGTGGCGATGGTGGTCCTTCTGTGCACCGCGTGCGTGCTGCTCATGGCGGCGCTGTACGTCGTGGTCGCAGCGAAACGACGAGGGGACCGCGAAAACGACGTGGAGCTGGATGGAAAGGACAGCGACGCGGACATGGCCCCACCTTGGGAAGTGACGCTGTACCAGAAACTCGATCTGTCTATCTCTGACGTAGCGAAATGTCTCTCTGCTGGCAACGTCATCGGCCACGGCCGATCCGGCGTCGTTTACAAGGTCGATTTGCCTGCCACAGGACTCGCCATCGCGGTGAAGAAATTCCGATTGTCGGAGAAATTCTCCGCGGCGGCGTTCTCGTCGGAGATTGCCACGCTGGCGCGAATCCGTCACCGGAACATCGTGCGGCTGCTGGGCTGGGGGGCCAACAGGAGGACGAAGTTACTGTTTTACGATTATTTACCGAACGGTAACTTGGACACACTGTTACACGAGGGGTGCACAGGGTTAATTGATTGGGAGACGCGGCTCAGGATAGCATTGGGCGTGGCCGAGGGTGTGGCTTACTTGCACCACGATTGCGTGCCTGCTATCTTGCACCGGGACGTCAAGGCGCAGAACATTTTGTTAGGAGACAGATATGAACCCTGTTTGGCTGATTTTGGATTCGCTCGTTTCGTCGAAGAGGATCACGCTTCCTTTTCCGTTAATCCACAGTTCGCCGGCTCCTACGGCTACATTGCTCCCGAGTATGCATGCATGCTTAAAATCACAGAGAAGAGCGATGTGTACAGCTTTGGCGTGGTCCTACTGGAGATAATAACGGGGAAAAGGCCAGTGGATCCATCATTCCCGGATGGACAACATGTTATTCAGTGGGTCAGGGAGCACCTTAAGAGCAAGAAGGACCCAATCGAGGTTCTTGATTCCAAGCTACAAGGCCATCCAGACACACAAATACAAGAGATGCTACAAGCACTTGGTATTGCTCTCTTGTGCACAAGTAATCGTGCAGAGGATCGACCGACAATGAAAGATGTTGCAGCATTATTGAGAGAAATTCGTCACGATCCTCCACCAGGCGCTGAGCCCCACAAGCCCAAGCCCAAAACAACCGAAGCTTCCTCCTATTCCTCCTCCTCAGTCACCCCTGCTCAGTTGTTGCTCCTACAATCTACTTCCCATTCCTCATCACTTGCTTATTCCTCTTCCTCAGCAGCAGGCTACCACCCTCCAAGGACCCAATCCTGA 3342 0.5165 MPVNLWTLFFLCISLLLPFHFLIAAAVNQQGEALLSWKRTLNGSLEVLSNWDPVQDTPCSWYGVSCNTKNEVAQLDLRYVDLLGRLPTNFTSLLSLTTLILTGTNLTGSIPKEIGELVELSYLDLSDNALSGEIPSELCYLPKLEELHLNSNDLVGFIPVAIGNLTKLQKLILYDNQLSGEVPSTIGNLQSLQVIRAGGNKNLEGPLPQEIGNCSSLAMLGLAETSLSGSLPPTLGLLKNLETIAIYTSLLSGEIPPELGDCTGLQNIYLYENSITGSIPSKLGNLKNLENLLLWQNNLVGTIPPEIGNCEQLSVIDVSMNSLTGSIPKTFGNLTSLQELQLSVNQISGEIPGELGKCQQLTHVELDNNLITGTIPSELGNLANLTLLFLWHNKLQGNIPSSLTNCQNLEAIDLSQNGLTGPIPKGIFQLKHLNKLLLLSNNLSGKLPSEIGNCSSLIRFRANDNNITGNIPSQIGNLNNLNFLDLGNNRISGVIPEEISGCRNLAFLDMHSNFIAGNLPESLSRLNSLQFLDVSDNMIEGTLNPTLGELAALSKLVLAKNRISGSIPSQLGSCSKLQLLDLSSNNLSGEIPGSIGNIPALEIALNLSLNQLSGEIPQEFSGLTKLGVLDISHNVLGGNLQYLAGLQNLVVLNISCNKFSGRVPDTPFFAKLPLSVLAGNPALCFAGNECGGDGGGRSGRRARVARVAMVVLLCTACVLLMAALYVVVAAKRRGDRENDVELDGKDSDADMAPPWEVTLYQKLDLSISDVAKCLSAGNVIGHGRSGVVYKVDLPATGLAIAVKKFRLSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDTLLHEGCTGLIDWETRLRIALGVAEGVAYLHHDCVPAILHRDVKAQNILLGDRYEPCLADFGFARFVEEDHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGIALLCTSNRAEDRPTMKDVAALLREIRHDPPPGAEPHKPKPKTTEASSYSSSSVTPAQLLLLQSTSHSSSLAYSSSSAAGYHPPRTQS 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01438 1113 SUPERFAMILY RNI-like 75 396 - -
Pumo4g01438 1113 SMART LRR_sd22_2 382 411 - -
Pumo4g01438 1113 SMART LRR_sd22_2 117 149 - -
Pumo4g01438 1113 SMART LRR_sd22_2 623 648 - -
Pumo4g01438 1113 SMART LRR_sd22_2 165 191 - -
Pumo4g01438 1113 SMART LRR_sd22_2 526 552 - -
Pumo4g01438 1113 SMART LRR_sd22_2 262 288 - -
Pumo4g01438 1113 SMART LRR_sd22_2 574 600 - -
Pumo4g01438 1113 SMART LRR_sd22_2 478 501 - -
Pumo4g01438 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Pumo4g01438 1113 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Pumo4g01438 1113 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Pumo4g01438 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Pumo4g01438 1113 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Pumo4g01438 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 895 907 IPR008271 GO:0004672|GO:0006468
Pumo4g01438 1113 SUPERFAMILY Protein kinase-like (PK-like) 763 1050 IPR011009 -
Pumo4g01438 1113 FunFam LRR receptor-like serine/threonine-protein kinase 763 850 - -
Pumo4g01438 1113 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 349 1043 - -
Pumo4g01438 1113 Gene3D Phosphorylase Kinase; domain 1 755 850 - -
Pumo4g01438 1113 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Pumo4g01438 1113 Pfam Leucine rich repeat 463 513 IPR001611 GO:0005515
Pumo4g01438 1113 ProSiteProfiles Protein kinase domain profile. 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01438 1113 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Pumo4g01438 1113 SMART LRR_typ_2 286 310 IPR003591 -
Pumo4g01438 1113 SMART LRR_typ_2 550 574 IPR003591 -
Pumo4g01438 1113 SMART LRR_typ_2 117 139 IPR003591 -
Pumo4g01438 1113 SMART LRR_typ_2 382 406 IPR003591 -
Pumo4g01438 1113 SMART LRR_typ_2 478 502 IPR003591 -
Pumo4g01438 1113 SMART LRR_typ_2 165 189 IPR003591 -
Pumo4g01438 1113 SMART LRR_typ_2 141 164 IPR003591 -
Pumo4g01438 1113 SMART LRR_typ_2 334 358 IPR003591 -
Pumo4g01438 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Pumo4g01438 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1065 - -
Pumo4g01438 1113 MobiDBLite consensus disorder prediction 1052 1067 - -
Pumo4g01438 1113 Gene3D Ribonuclease Inhibitor 433 689 IPR032675 -
Pumo4g01438 1113 Gene3D Ribonuclease Inhibitor 198 432 IPR032675 -
Pumo4g01438 1113 MobiDBLite consensus disorder prediction 1052 1079 - -
Pumo4g01438 1113 Gene3D Transferase(Phosphotransferase) domain 1 851 1058 - -
Pumo4g01438 1113 SMART serkin_6 774 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01438 1113 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Pumo4g01438 1113 Pfam Protein kinase domain 777 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01438 1113 FunFam LRR receptor-like serine/threonine-protein kinase 524 599 - -
Pumo4g01438 1113 SUPERFAMILY RNI-like 316 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01438 Pumo-Chr4 18207445 18212009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01438 26 1103 Receptor kinase-like Gene Family AT5G56040 54.278 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo4g01438 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01438 - - gmx:100778064 1932.53