LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo4g01428	ATGCCGCAATTTTTCAATCGTATTACCTGGCTAATCCTGTCCTTATTAATCCCACGTGTGGCTTCCTCCGTGGGGATACACGAAACCGGTCTCACGTGCGGGGCTTCTCAGAACCCTGGATCGAGCGCGTCCAAGTTCATGGCCATAATGGACACGGTGTCGTTTCAGGTCAAAGACCGGGGCTGGGGAGCGCAGACGCTCCTTGGTTCTGGGCCTCCGATGTACGCATTGGGCCAATGCCGCCACGACCTCAGGCCCACGGAGTGCTACACGTGTTTCAGCCAAGCGAGGCAAGTGCTGTCGCGGTGCGTGCCCAAGACAGCCGGCAGAATCTACCTCGACGGCTGCTTCCTCCGCTACGACAACTACTCGTTCTTTCGCGAGAGCGTGGACCCCACGCGAGACATCAACGTCTGCCAGTCGTCGGGTCTGGGAAAAGACGGGGACAGACGGGTGGCAACGGCGGTGGCAAACGTGACGAAGGGCGCGGCGGAACGAGGGTTCGCGGTGGGTGGAGGGGAGGGGGTTTTCGCCTTGGCGCAGTGCTGGGGGACGATGGATAAATGGACGTGCGCGAGATGCCTGAGTGAAGCAGGGAAGAAAGTGCAGGAATGTGTGCCTAATGCTGAGGGTAGGAGTCTCTTTACTGGTTGCTTTTTGAGGTATTCAACGCACAAGTTCTACAACGACGTTGCAGTGCATGACATCAAGGATTCTATTAATTCTAGAGGTGATGCTTACTCATCTGAAGCCATAGTGCTAGTATATATTTTTCTCTGCTCTAATGTGCTAATCTTACTCTCTTCAGTAAGCGACAGTTGCGGTGCGTCACCTAGTTTTGCCTACGTGGCTGGCTTCAGTTTTAGGTACGATTTGCTTGAGAAGGCCACAAATTATTTTGATCCCGCAAACAAATTAGGGCAGGGTGAAGCTGGTTCCGTGTTCAAAGGAAGCCTCCCCTCAGGGGGGACCGTTGCTGTTAAACGACTGTTTTGTAATACACGGCAATGGCCAGATGGGTTCTTCAATGAGGTCAATTTGATTAATGGGATTCAACACAAGAATGTGGTGAAACTTTTGGGGTGCAGCATTGAAGGTCCTGAAAGCCTGTTGGTTTATGAATTTGTGCCCAATGGAAATCTTGATCAAGTCCTTTTCGGTAAGGACTCAGAAAATGCTCTGAACTGGGAACAACGGTTTCAAATCATATGTGGGATAGCTGAGGGCTTAGCATACCTTCATGGAGGCTCTGGAACAAAGATTATTCACAGAGACATAAAGTCCAGCAACATTCTATTTGATGAGAATCTTAATCCAAAAATAGCTGATTTTGGTCTTGCTCGTTGTGTTGCTGAAAATAAATCTCATCTTAGCACCGGAAATGCGGGGACACTGGGATATATGGCTCCTGAGTATGTTATCGAAGGACAATTGACAGAGAAGGCAGATATCTATGCTTTTGGTGTGTTAGTTGTTGAAATTGTCTGTCGCAAGAAGAACAGTGATTACATACCAGGGTCAACTTCAGTACTCCACAGTGTGTGGAAGAATTACAATGCAAATAATATCACAGCATCCGTTGATCCCGCTCTACATGGCAAATTTACAGTAGAAGAGGCATCAAATGCACTCCAAGCTGGCCTTCTTTGTACACAATCTTCTGATACTCTTAGACCATCCATGTCTGAAGTAGTTCAGATGCTAACCAAGAAAGACTACGCTATTCCCTCCCCAAAGCAACAACCATTCCTCAATTTCAGTGGGCTAAGTCAAAATGACCGCACCGTGAATTCCACAACCAGCATTCTATCCTCAAATGGACATGCAAGTGCAAGGTCCTCCTTCCACAGCACCACCAGTTCCCTAATTCCAAATGATGATATAACAGTACTAGAGAATTCCTTTTCTTCTTCTGCCAGGTTCACCACTACAGGGAGCCCTGATTCAAATATCCAAATAAATATTGGGGCACCTGAGCCAAGGTAG	1986	0.4829	MPQFFNRITWLILSLLIPRVASSVGIHETGLTCGASQNPGSSASKFMAIMDTVSFQVKDRGWGAQTLLGSGPPMYALGQCRHDLRPTECYTCFSQARQVLSRCVPKTAGRIYLDGCFLRYDNYSFFRESVDPTRDINVCQSSGLGKDGDRRVATAVANVTKGAAERGFAVGGGEGVFALAQCWGTMDKWTCARCLSEAGKKVQECVPNAEGRSLFTGCFLRYSTHKFYNDVAVHDIKDSINSRGDAYSSEAIVLVYIFLCSNVLILLSSVSDSCGASPSFAYVAGFSFRYDLLEKATNYFDPANKLGQGEAGSVFKGSLPSGGTVAVKRLFCNTRQWPDGFFNEVNLINGIQHKNVVKLLGCSIEGPESLLVYEFVPNGNLDQVLFGKDSENALNWEQRFQIICGIAEGLAYLHGGSGTKIIHRDIKSSNILFDENLNPKIADFGLARCVAENKSHLSTGNAGTLGYMAPEYVIEGQLTEKADIYAFGVLVVEIVCRKKNSDYIPGSTSVLHSVWKNYNANNITASVDPALHGKFTVEEASNALQAGLLCTQSSDTLRPSMSEVVQMLTKKDYAIPSPKQQPFLNFSGLSQNDRTVNSTTSILSSNGHASARSSFHSTTSSLIPNDDITVLENSFSSSARFTTTGSPDSNIQINIGAPEPR	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo4g01428	661	ProSiteProfiles	Protein kinase domain profile.	300	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01428	661	ProSiteProfiles	Gnk2-homologous domain profile.	126	227	IPR002902	-
	Pumo4g01428	661	Pfam	Protein kinase domain	303	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01428	661	MobiDBLite	consensus disorder prediction	640	661	-	-
	Pumo4g01428	661	Gene3D	Phosphorylase Kinase; domain 1	274	375	-	-
	Pumo4g01428	661	Gene3D	Transferase(Phosphotransferase) domain 1	376	580	-	-
	Pumo4g01428	661	Pfam	Salt stress response/antifungal	167	224	IPR002902	-
	Pumo4g01428	661	Pfam	Salt stress response/antifungal	45	123	IPR002902	-
	Pumo4g01428	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Pumo4g01428	661	ProSiteProfiles	Gnk2-homologous domain profile.	24	125	IPR002902	-
	Pumo4g01428	661	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	74	595	-	-
	Pumo4g01428	661	SMART	serkin_6	300	584	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo4g01428	661	Gene3D	-	31	125	IPR038408	-
	Pumo4g01428	661	Gene3D	-	146	227	IPR038408	-
	Pumo4g01428	661	SUPERFAMILY	Protein kinase-like (PK-like)	286	592	IPR011009	-
	Pumo4g01428	661	FunFam	Putative DUF26-domain receptor-like protein kinase family protein	279	375	-	-
	Pumo4g01428	661	CDD	STKc_IRAK	306	570	-	-
	Pumo4g01428	661	FunFam	Cysteine-rich receptor-like protein kinase 2	376	576	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo4g01428	Pumo-Chr4	18077158	18080618	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo4g01428	1	585	Receptor kinase-like Gene Family	AT1G70520	40.484	1.10e-145	436

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pumo4g01428		Pkinase	3.2e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo4g01428	-		-	gmx:100780384	1031.94