Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01427 ATGGAGGACCTGTACGGCTTCCAGTACATCGCCGGTTACTCGGAGCAGTCGCAGTCAACAGTGTTGAGTCCGCCATTAACACCGACCGGTCAAAACGCGATCTCATCATCGATTCCTGAACCGCAGCTATTGGTCCGGCATGGTTCTGCTTCTTCATGTTCCATCGAGGAGAACCAAGTTTCTAAAACACTTCCCGCTGAAATTGCTTCTCATCCTCTTTTTCCGAAGCTCCGCGATGCCTATATAAATTGCCAGAAGGTGGGAGCGTCGGAGGAGATGGTCAAAGTATTAGAGGAAATGGAAGGAAAGAACAGCGCTGACGGTGTGTGTCACACATCTGATCCCGAGCTCGACGATTTCATGGAAACGTATTGCAATTTATTGGTGAAGTACAAATCGGACCTCTCGAGGCCTTTTGACGAGGCAGTCGCGTTTCTAAACGACATGGAAACGCAGCTTAACTCCATCTGCAACGGTTCTGCTCTTGGAAACATTACTGATGAAGCCACTGAAGAGGACTTCGGTAGAGAAGAGAAAGAGGCAATTGTGTGCAAGAGGATAAGTGAGGATCGAGAGCTGAAGGATAAGCTTCTGTGTAGATATAGCGGCTATATTAGCAGGCTGAAGCATGGATTTTCCAAAAATAAGAAGAAAGAAAAGTTACCCAAAGAAGCAAGGCAAATCTTAATTGCATGGTGGAATATTCACTTCAACTGGCCATACCCAACGGAAACGGATAAGATTGCCCTAGCTGAATGGACTGGTCTTGACCAGAAGCAGATAAACAATTGGTTTATTAACCAAAGGAAGCGCCACCGGAAACCATCGCCGGAGATGCAAGCTTCATGGATGTCCCAGCATGAATGA 867 0.4683 MEDLYGFQYIAGYSEQSQSTVLSPPLTPTGQNAISSSIPEPQLLVRHGSASSCSIEENQVSKTLPAEIASHPLFPKLRDAYINCQKVGASEEMVKVLEEMEGKNSADGVCHTSDPELDDFMETYCNLLVKYKSDLSRPFDEAVAFLNDMETQLNSICNGSALGNITDEATEEDFGREEKEAIVCKRISEDRELKDKLLCRYSGYISRLKHGFSKNKKKEKLPKEARQILIAWWNIHFNWPYPTETDKIALAEWTGLDQKQINNWFINQRKRHRKPSPEMQASWMSQHE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01427 288 ProSitePatterns 'Homeobox' domain signature. 250 273 IPR017970 GO:0000981|GO:0006355
Pumo4g01427 288 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
Pumo4g01427 288 ProSiteProfiles 'Homeobox' domain profile. 212 275 IPR001356 GO:0003677
Pumo4g01427 288 CDD homeodomain 224 276 IPR001356 GO:0003677
Pumo4g01427 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 281 - -
Pumo4g01427 288 MobiDBLite consensus disorder prediction 269 288 - -
Pumo4g01427 288 Pfam ELK domain 192 213 IPR005539 GO:0003677
Pumo4g01427 288 SUPERFAMILY Homeodomain-like 214 284 IPR009057 -
Pumo4g01427 288 SMART KNOX1_2 62 106 IPR005540 GO:0003677|GO:0005634
Pumo4g01427 288 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677|GO:0005634
Pumo4g01427 288 Pfam Homeobox KN domain 232 271 IPR008422 GO:0003677|GO:0006355
Pumo4g01427 288 SMART ELK_2 192 213 IPR005539 GO:0003677
Pumo4g01427 288 Gene3D - 210 285 - -
Pumo4g01427 288 SMART HOX_1 214 279 IPR001356 GO:0003677
Pumo4g01427 288 Pfam KNOX1 domain 66 102 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01427 Pumo-Chr4 18069138 18074802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01427 1 284 Homeobox Transcription Factor Family AT1G23380 45.768 1.79e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo4g01427 KNOX2 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01427 - - aprc:113874840 416.001