Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01420 ATGTTGCCCTTAGTTTCTGTTACTCCTCCCATGGACATTGAAACAAACCTCACAGAAAACTATGCCTCACAGCCAATGCATTTGCAAGAAAACTACTTGAAACCCAGCATGGAAGATCAGCTTCCTTTTGGAGCTCCTTCCTCGCAGGGTTTCTTGCAAGATTTTCATCATATTGATCACCAGTTTCATGTGAATGGCTCCTCATCCAATCCCATTTTCGGGGTACAAACTCCAAATTTTGATCCCTTTGATCACAATAATGTAACATGTGAGTATGCACCTCCTGATTTTGAAGTTTTTGAGTGCAAGCCTTTTGCTGAGAGTAATATTGGTAGTGGACATGCTCATCTTATGGACAATTTCCAATATGTAGGTTACAGTTTGAACCTCCCTCGGACGAATCAACTGGATATCATGGTCGCAAACCAAAGTTATATGCCCTTTAATGCTCTTGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATACATTTCCCCACCAAATTATTTTAAGAGAGTTGGCTTGAATAAAAACCTCAGGGAATCTCCAAGCACTAGGAGAACATTCAAGGCACGGAAGAAGTCTAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTCGAACAATATGGAGTGAGGAAGTGGTCACATATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTAAGGCCAGACATTAAGTGTTCAGATCAATTTTGTCCCAATGGCCACTTGGTGCCAAGGTATGATTTTAACGAGGTCCCAGATTTTTGTTTGGATGATAATTTGTTTGAAGAGGGGTGCAGCATTGATTCTTTGCTTGATGATATGCAAAGTGCTTCTACTATGGATGAGAAAGACTTTGATGGAAAAATGCAATGTGCTCCTACTATGGAGGGAAAACAATCTCATCAGGGTGGCATGCAGTGTGTTCATGTTGTTGATGTTGATGAGCATCATGATCATGAGACTGAGATGATGGCACCCTCGATGGGGATTGAAGTTAAGAAGGAACTGGACTTGGTGGAGATGATGTCCCACATTAATGAAAGCCATTATAGTACACACTCACCACGTTGA 1137 0.4151 MLPLVSVTPPMDIETNLTENYASQPMHLQENYLKPSMEDQLPFGAPSSQGFLQDFHHIDHQFHVNGSSSNPIFGVQTPNFDPFDHNNVTCEYAPPDFEVFECKPFAESNIGSGHAHLMDNFQYVGYSLNLPRTNQLDIMVANQSYMPFNALETKPLNFVVPDEVSYISPPNYFKRVGLNKNLRESPSTRRTFKARKKSNIVKGQWTSDEDRLLIQLVEQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKCSDQFCPNGHLVPRYDFNEVPDFCLDDNLFEEGCSIDSLLDDMQSASTMDEKDFDGKMQCAPTMEGKQSHQGGMQCVHVVDVDEHHDHETEMMAPSMGIEVKKELDLVEMMSHINESHYSTHSPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01420 378 ProSiteProfiles Myb-like domain profile. 197 248 IPR001005 -
Pumo4g01420 378 SMART sant 201 250 IPR001005 -
Pumo4g01420 378 Pfam Myb-like DNA-binding domain 202 248 IPR001005 -
Pumo4g01420 378 PANTHER MYB PROTEIN-RELATED 176 254 - -
Pumo4g01420 378 CDD SANT 205 248 IPR001005 -
Pumo4g01420 378 FunFam Transcriptional activator Myb isoform A 201 253 - -
Pumo4g01420 378 Gene3D - 201 253 - -
Pumo4g01420 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 252 IPR017930 -
Pumo4g01420 378 SUPERFAMILY Homeodomain-like 202 266 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01420 Pumo-Chr4 17995826 17998302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01420 71 253 MYB Transcription Factor Family AT4G18770 41.148 1.22e-36 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo4g01420 Myb_DNA-binding 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01420 K09422 - gmx:100816653 466.463