Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01405 ATGCAATATCTTCATTCTCAGGGTATACTTCACAGGGATCTCAAGTCAGAAAACCTGCTGTTGGGGGAAGATTTGTGTGTAAAAGTAGCAGATTTTGGGATCTCATGCTTGGAATCTCAGACAGGCAGTGCAAAAGGATTCACTGGAACATACCGTTGGATGGCACCTGAAATGATCAAAGAAAAGCGTCACACCAAGAAAGTAGATGTCTATAGTTTCGCCATAGTTCTATGGGAACTCCTAACAGGATTGACGCCATTTGACAACATGACACCAGAGCAGGCAGCATATGCTGTGACTCATAAGAATGCAAGGCCTCCGTTACCATGTGACTGTCCAAAGGCATTTAGTAATCTCATAAACAGATGCTGGTCAAGCAATCCAGATAAAAGGCCACATTTTGATGAGATAGTTGCAATTTTGGAGAGCTATACTGAAGCACTTGAGCAGGATCCAGAATTTTTCTCTACTTACAAACCACGTCCTGATAATATAATTCTCAGATGCTTATCAAAATGTAATATTGGCAATATATTTGCTTCTTGCAAAGCTTAG 555 0.4072 MQYLHSQGILHRDLKSENLLLGEDLCVKVADFGISCLESQTGSAKGFTGTYRWMAPEMIKEKRHTKKVDVYSFAIVLWELLTGLTPFDNMTPEQAAYAVTHKNARPPLPCDCPKAFSNLINRCWSSNPDKRPHFDEIVAILESYTEALEQDPEFFSTYKPRPDNIILRCLSKCNIGNIFASCKA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01405 184 SUPERFAMILY Protein kinase-like (PK-like) 1 166 IPR011009 -
Pumo4g01405 184 ProSiteProfiles Protein kinase domain profile. 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo4g01405 184 ProSitePatterns Serine/Threonine protein kinases active-site signature. 9 21 IPR008271 GO:0004672|GO:0006468
Pumo4g01405 184 Pfam Protein tyrosine and serine/threonine kinase 1 140 IPR001245 GO:0004672|GO:0006468
Pumo4g01405 184 Gene3D Transferase(Phosphotransferase) domain 1 1 172 - -
Pumo4g01405 184 PRINTS Tyrosine kinase catalytic domain signature 49 59 IPR001245 GO:0004672|GO:0006468
Pumo4g01405 184 PRINTS Tyrosine kinase catalytic domain signature 68 90 IPR001245 GO:0004672|GO:0006468
Pumo4g01405 184 PRINTS Tyrosine kinase catalytic domain signature 3 21 IPR001245 GO:0004672|GO:0006468
Pumo4g01405 184 PRINTS Tyrosine kinase catalytic domain signature 112 134 IPR001245 GO:0004672|GO:0006468
Pumo4g01405 184 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 144 - -
Pumo4g01405 184 SMART serkin_6 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01405 Pumo-Chr4 17834487 17836268 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01405 1 150 MAP Kinase Kinase Kinase AT1G62400 66.667 1.13e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pumo4g01405 PK_Tyr_Ser-Thr 6.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01405 - - gmx:100785212 370.163