Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01402 ATGGCTATCAGAGGCGTCGATTTCAAGTGGTACGATGGGTTTTTCTTGTCCATGCTCGCCACCAGTGTAGTTATTGTGGCAATTAATTGGAAGCGGTATCATTCTTGCACGTATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTCTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGTAGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCTTTTCTTTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAAGAGGGTCAAAAATGGGGATTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTATGCATTGCTTGCATGTCTCTGGGGAAGTGGTTGACACGAAGACGAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTAAATGTGAAATGTCCTCGGTGCCGTTGCTCATCCAATCTCCGTGCTGAGCCAGAACGATCTTTTGCCAGTGTTGTGACAACAACCAGATATGTTAGAGGCCAACCATCTAGTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGTCCAGTCCGTGCTGAAATTGCAGGGCCAGTTGGTGACATAGATAGTGCGTTGGAAAATGCTGAGAACGGTGTTGTATCAATTGTGACTCAAAATGCATCATCTGAAGACCATGTCTCTTCTGTCGAATGCGTGCCTGTCACTGTCAGTCTTTCCTCTGCACAAAATTAG 1119 0.4629 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAVGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEEGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRRAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSSNLRAEPERSFASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDIDSALENAENGVVSIVTQNASSEDHVSSVECVPVTVSLSSAQN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01402 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 280 IPR013083 -
Pumo4g01402 372 SMART ring_2 235 275 IPR001841 -
Pumo4g01402 372 FunFam E3 ubiquitin-protein ligase SIS3 203 280 - -
Pumo4g01402 372 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Pumo4g01402 372 Pfam Ring finger domain 234 276 IPR001841 -
Pumo4g01402 372 SUPERFAMILY RING/U-box 217 280 - -
Pumo4g01402 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 351 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01402 Pumo-Chr4 17798120 17805697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01402 58 350 C3H Transcription Factor Family AT3G47990 71.242 6.08e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01402 K16284 - gmx:100812016 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01402 4 17798120 17805697 Pumo4g01402 4 17798120 17805697 ECH
Pumo4g01402 4 17798120 17805697 Pumo10g02047 10 27497363 27501357 PCT