Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01398 ATGAAAAACCCTACTACTACTAGTGGTTCACCAAAACTTGATCGCAAAACTATTGAAAGGAACCGCAGAATTCACATGAAATCTCTCTGCTTCAAGCTTGTTTCCATTATTCCTTCCAATTACCTCAAACCGACTAAGGACATGCTTTCCCAGCAGGATCAGCTTGATCTAGCAGCCACGTATATAAAGCATCTGAGGGAAAGAATAGAGAAATTGAAGGGGGAGAAGGAGCAAGCCATGAACATGATGATGAGATCAAAGCAAAACAACAATAGAGTTTTCAATATTGGCTCTCAGTTGCCTCTACTTGAGATAAAGGACTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGTTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGCTGAAGTTGTCACTGCCAACTTCTCTACCGTTGCTGATAAGATATTTTACACGGTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCAACGAGGGTATATCAAAGGCTTCAGGAGTTGATTGCACCACTCGAAAGCTGGGAGTACATATCGTGA 573 0.4154 MKNPTTTSGSPKLDRKTIERNRRIHMKSLCFKLVSIIPSNYLKPTKDMLSQQDQLDLAATYIKHLRERIEKLKGEKEQAMNMMMRSKQNNNRVFNIGSQLPLLEIKDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPLESWEYIS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01398 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 179 - -
Pumo4g01398 190 Coils Coil 62 89 - -
Pumo4g01398 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 65 IPR011598 GO:0046983
Pumo4g01398 190 FunFam Transcription factor bHLH162 3 93 - -
Pumo4g01398 190 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Pumo4g01398 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 84 IPR036638 GO:0046983
Pumo4g01398 190 Gene3D - 4 94 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01398 Pumo-Chr4 17764003 17765332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01398 5 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.054 9.27e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo4g01398 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01398 - - gmx:100811485 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01398 4 17764003 17765332 Pumo10g02049 10 27556231 27557933 ECH
Pumo4g01398 4 17764003 17765332 Pumo4g01398 4 17764003 17765332 ECH
Pumo4g01398 4 17764003 17765332 Pumo10g02049 10 27556231 27557933 PCT