Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01395 ATGACTCAAAGAGATCGCCGCACCCTATCATTCCCGGCGGTTCATCCTTGCGAAGGCATATCTCCGCCCACACTTCTCGCCTCTCTAATCACTCTCTCCCAATCCATATGCAATTACCAACCCCAATCGTTCCCCACCCAACGTCGCAACGCGAGAGAAACAATACGCCAAATAAGCATAGTCTTAATCTTCCTTCAAGAAATTCGAGACCGTGGATTATTAATCCCTAACTCCACCATCCTCTGCTTCGCAGAACTCCACTTCACTTTACAAAAGATCCACTTCTTGATGCAAGATTGCACTCTCGAAGGCGCGCGCCTCCTAATGCTCGCGAAATCGCAACACGTGGCGTCGCATTTCCGCGCCCTCGTTCGCGCCGTGGCCACCTCCCTCGACGTTTTGCCGCTTCACAAGTTCGACGTCTGCGGCGAAGTGAGGGAGCTAGCGGAGTTAGTAACGAAGCAAGCGAGGAAGGCCAAGTTCGAAGTGGACCCCAGCGACGCACGTGCGAGCAAAACTCTCCACACGGTCCTGCGCCAGTTCGCGAGGGGAACCGAACCGGACCTCACTTCCATGCAGGGAATCATCGACTACCTCGAGATTAGAACCTGGACGGATTGTAACAAAGAGATTAAGTTCCTAGAAGAAGAAATCAGCTTAGAGTGTCACGATCGTGAGGAGAAAGAGGTTCCGTTACTGTGTAGCTTGGTAGGGTTCTTAAGTTACTGCAGAGGAGTCATTTTCGGAACTATACAAGACACAGACACCAATCAATCCGAAAGAAGATGCAGCACGGAGATGACGGCGTTAAATTTGTCGTTATTAACGTCCGTTAATCCGGAGGATTTCCGTTGCCCGATTTCGCTCGAGTTGATGACGGATCCGGTAACGGTGTCAACGGGTCAAACCTACGACCGAGCCTCCATTCAGAAATGGCTCAAAGCCGGGAACACCACATGTCCCAAAACAGGGGAGAAGCTTACAAACACAGAGTTGGTTCCCAACACCACGCTCAAGAGACTCATCCAACAGTTCTGCGCGGTGAACTCATGTAACCGTAAAAGCAACATCGTCGTGGCAGGTAGTCCCGCGGCGGCGCACGCGATTCAATTCCTCGCGTGGTTTCTCACGCGCAGGCTCGCGTTCGGAACGGAAGAGCAGAAGCTCAAGGCCGCGTACGAGATTCGCGTGCTTGCCAGAACCAGCATTTTCAATAGGGCGTGTTTGATTGAAATGGGAACAGTGCCTCCTCTGCTAGAAGTTCTAGCCTCTGCATCAAACGATAGATCCACGCAAGAGAACACAATCTCTGCTTTATTGAAGCTCTCTAAACATCCGAATGGACCAAAAAACATCATAAACAGTGGGGGCCTAACCGTAATTCTCTCTGTGTTAAAAAATGGACTTAGGCTAGAAGCTCGCCAGGTCGCAGCTGCTACAATATTTTATCTTTCTTCGGTGAAAGAATATCGGAAGTTAATAGGGGGAAACCCTGAGGTGATTCCAGCTTTGGTGGAGTTAGTTAAGGAAGGAACAACCTGCGGGAGAAAGAACGCTGTGGTTGCGATTTTCGGCTTACTTTTGCTTCCTAGGAATCACCAAAGAGTTCTCACTGCTGGTGCTGTTCCTGCGCTTCTTGACATTTTGGCTTCTTCAGATAAGGACGAACTTGTGACTGAATCTTTGGCGGTTCTTGCTGCACTAGCTGAGAATGTTGACGGAGCAAGTGCAATAATATTGCAAGGTTCCGCGTTACCGTTGATTACGGGTTTGTTGCGATCTGCCACGTCACGCGCGGGGAAAGAGCACTCTGCTTCGATTTTGTTGTCGCTTTGCGTCAATGTTGGCGCGGAGGTGGTGGCGGTTCTCGCCAAGGACCCTTCGCTGATGCCTCTGCTTTATTCGCTTCTCACGGATGGGACTTCTCATGCAGCAAAGAAAGCGCGGTTCCTCATCAAAGTTATACAAGATTTCCACGAGACTAGAAGTGCTGGACTCAAAGGTTCCTCGCTTCCGCAGCAGGAACGATCGCTTCACGTTTGGTAA 2046 0.5039 MTQRDRRTLSFPAVHPCEGISPPTLLASLITLSQSICNYQPQSFPTQRRNARETIRQISIVLIFLQEIRDRGLLIPNSTILCFAELHFTLQKIHFLMQDCTLEGARLLMLAKSQHVASHFRALVRAVATSLDVLPLHKFDVCGEVRELAELVTKQARKAKFEVDPSDARASKTLHTVLRQFARGTEPDLTSMQGIIDYLEIRTWTDCNKEIKFLEEEISLECHDREEKEVPLLCSLVGFLSYCRGVIFGTIQDTDTNQSERRCSTEMTALNLSLLTSVNPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNTTCPKTGEKLTNTELVPNTTLKRLIQQFCAVNSCNRKSNIVVAGSPAAAHAIQFLAWFLTRRLAFGTEEQKLKAAYEIRVLARTSIFNRACLIEMGTVPPLLEVLASASNDRSTQENTISALLKLSKHPNGPKNIINSGGLTVILSVLKNGLRLEARQVAAATIFYLSSVKEYRKLIGGNPEVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRVLTAGAVPALLDILASSDKDELVTESLAVLAALAENVDGASAIILQGSALPLITGLLRSATSRAGKEHSASILLSLCVNVGAEVVAVLAKDPSLMPLLYSLLTDGTSHAAKKARFLIKVIQDFHETRSAGLKGSSLPQQERSLHVW 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01395 681 FunFam RING-type E3 ubiquitin transferase 350 666 - -
Pumo4g01395 681 Gene3D - 345 665 IPR011989 -
Pumo4g01395 681 CDD RING-Ubox_PUB 280 332 IPR045210 -
Pumo4g01395 681 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Pumo4g01395 681 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Pumo4g01395 681 SUPERFAMILY ARM repeat 376 655 IPR016024 -
Pumo4g01395 681 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Pumo4g01395 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 344 IPR013083 -
Pumo4g01395 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 583 IPR000225 GO:0005515
Pumo4g01395 681 PANTHER U BOX DOMAIN-CONTAINING 63 653 - -
Pumo4g01395 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 457 IPR000225 GO:0005515
Pumo4g01395 681 SUPERFAMILY RING/U-box 279 351 - -
Pumo4g01395 681 SMART arm_5 401 444 IPR000225 GO:0005515
Pumo4g01395 681 SMART arm_5 529 570 IPR000225 GO:0005515
Pumo4g01395 681 SMART arm_5 445 486 IPR000225 GO:0005515
Pumo4g01395 681 FunFam RING-type E3 ubiquitin transferase 278 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01395 Pumo-Chr4 17701543 17704029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01395 2 681 U-box Gene Family AT1G60190 40.922 2.87e-171 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01395 - - gmx:100787869 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01395 4 17701543 17704029 Pumo4g01395 4 17701543 17704029 ECH