Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01394 ATGGCAGCTCGCAGACTTTCCTGGCTACTCTCACGCTCTCTCTCTGCTTCCCATTCTTCTGGAGCTTCTTCTCCGCTTCACTCACTGGGAAGAAACTCTGGAGGGTGGAGACACATTAACAGATTTAGCACGGCTGCAGCAGTTGAGGAACTAATCACTCCACAAGTTCCAATACGTTACACACAGCACCTGATAAATGGGCAATTTGTGGATGCTGCATCAGGGAAAACATTTCCAACATATGACCCGCGCTCAGGAGAAGTGATTGCTAAAGTTGCTGAAGGGGATGCTGAAGACATCAACCGTGCAGTATCAGCAGCTCGCAAGGCCTTTGATGAAGGACCTTGGCCAAAAATGACTGCATATGAAAGAAGTAGGATATTGCTGCGCTTTGCTGATTTGGTTGAGAAACACAGCGATGAGCTTGCTGCTCTGGAGACATGGAACAATGGAAAGACTTATGAACAGGCTGCCAAGGTTGAATTGCCAATATTTGTGCGTTTATTTCACTATTATGCTGGTTGGGCAGATAAAATTCATGGACTAACAGTCCCAGCTGATGGAGATTATCATGTTCAGACATTGCATGAACCAATTGGTGTAGCAGGACAAATTATACCTTGGAACTTTCCTCTACTTATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCATGTGGTAATACCATTGTTCTGAAGACTGCCGAACAAACTCCACTGACAGCTCTCTTTGCGGCAAAACTATTTCATGAGGCTGGTCTTCCTGAAGGTGTTCTGAATGTAGTTTCTGGGTATGGTCCAACTGCTGGTGCAGATCTTGCAAGTCATATGGATGTGGATAAGCTAGCATTCACTGGCTCAACAGATACTGGAAAAGTTGTACTTGAATTGGCTGCAAGAAGCAATCTTAAGCCAGTGACATTGGAGCTTGGAGGGAAATCGCCTTTCATAGTATGTGAGGATGCTGATGTTGACAAGGCTGTTGAACTCGCACACTTTGCTCTGTTCTTTAATCAGGGGCAATGTTGCTGTGCCGGGTCTCGTACCTTTGTACATGAGCGTGTCTATGATGAGTTCTTGGAGAAATCAAAGAAACGAGCTTTGAGACGTGTTGTTGGTGATCCATTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGACGTGGAACAATTTGAGAAAGTCCTTAGGTACATAAGGTCTGGAATTGAAAGCAATGCCATCCTTGAATGTGGGGGTGATAGATTGGGCTCAAAAGGCTTCTTTGTCCAGCCAACTGTCTTCTCAAATGTTCAGGATGACATGTTGATAGCACAAGACGAAATCTTTGGCCCAGTTCAGTCCATCTTGAAATTCAAGGACATTGATGAAGTAATACAACGGGCAAATAAAACACGTTATGGTCTAGCAGCAGGTGTGTTTACGAAGAACGTGAACACGGCCAACACATTGATGCGGGCACTGAGAGCTGGAACTGTGTGGATTAATTGCTTTGATGTCTTTGATGCTGCAATTCCTTTTGGTGGGTACAAGATGAGTGGTATTGGCAGGGAGAAAGGAATCTACAGTCTTCACAACTACCTGCAGGTGAAAGCTGTTGTCTCACCAGTGAAGAATCCTGCGTGGCTATAG 1626 0.4502 MAARRLSWLLSRSLSASHSSGASSPLHSLGRNSGGWRHINRFSTAAAVEELITPQVPIRYTQHLINGQFVDAASGKTFPTYDPRSGEVIAKVAEGDAEDINRAVSAARKAFDEGPWPKMTAYERSRILLRFADLVEKHSDELAALETWNNGKTYEQAAKVELPIFVRLFHYYAGWADKIHGLTVPADGDYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALFAAKLFHEAGLPEGVLNVVSGYGPTAGADLASHMDVDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFLEKSKKRALRRVVGDPFKKGVEQGPQIDVEQFEKVLRYIRSGIESNAILECGGDRLGSKGFFVQPTVFSNVQDDMLIAQDEIFGPVQSILKFKDIDEVIQRANKTRYGLAAGVFTKNVNTANTLMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVSPVKNPAWL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01394 541 FunFam Mitochondrial aldehyde dehydrogenase 2 313 502 - -
Pumo4g01394 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Pumo4g01394 541 Pfam Aldehyde dehydrogenase family 69 531 IPR015590 GO:0016491
Pumo4g01394 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 529 IPR016162 GO:0016491
Pumo4g01394 541 FunFam Aldehyde dehydrogenase, putative 503 529 - -
Pumo4g01394 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Pumo4g01394 541 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 65 320 - -
Pumo4g01394 541 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 531 - -
Pumo4g01394 541 CDD ALDH_F2BC 58 532 - -
Pumo4g01394 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Pumo4g01394 541 SUPERFAMILY ALDH-like 55 534 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01394 Pumo-Chr4 17687737 17692677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01394 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 79.412 0.0 904