Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01390 ATGGTGGTAAGATCGTGCTCGAATTTGTCTGACTTGGTGTCCGAGGACAGTTTGAATTCCCCTCAAACTCCTGGAGCTCTTCCCCGACGCCTGTCTGTTCCAGAAATTATGTCTGATGTGGATGGCAAACTAAGGGACAATGATGATTCAAATGCTTTCTCATCAGAACTCCATCAGAAGAAGATCATTATAGTAGCAAATTTTCTTCCTCTCAATGCTCAAAAGGATGAAATATCTGGCAGATGGTGCTTCACTTATGATGAAGATTCAATCTTGTTGCCATTGAAGGATGGTCCCTCTTCTGACACTGAGGTTCTTTATGTGGGATCTCTGAAGGTTGATGTTGATGCTAGTGAACAAGAGAAAGTTTCTCTTCAGCTACTGGAGGAATTCAATTGCTTGCCTACCTTTATTCCTTCAGACATCCAGAAACAATTTTATAATGGATTCTGCAAGCAACATTTGTGGCCTCTGTTCCATTACATGTTGCCCTTGTATCCAGACAACTGCAATCGCTTTGACAAGTCACTGTGGCAGGCTTATGTTTCTGCTAACAAAATATTTGCTGATAAAGTCATGGAGGTTATGAATCCAGAGCATGATTATGTATGGGTTCATGATTATCATCTTATGGTTATTGCAACATTTCTACGGAAGCGATACAGTTGGATCAAGATAGGATTTTTCCTCCACTCTCCATTTCCTTCATCGGAAATTTATCGGGCTTTACCTGTCAGGGATGAAATTTTGAAAGCACTGCTTAATGCAGATTTAATTGGTTTTCATACATTTGATTATGCTCACCACTTTCTTTCCTGCTGTAGTCGAATTCTTGGCTTAGAATATGAATCCAAAAGGGGTTACATCAAGCTCGAATACTTTGGCCGTACTATATTCATTAAAATCTTGCCTGTAGGGATTCATATGGATCGACTTCAATCTGCCTTGAATCACCCTTCTTTCTTATTCAATGTCAGAGAAATGTGGGAGAAGTTCAAGGAGAAAAAACTTATTCTTGGAGTTGATGATATGGACATTTTTAAAGGTATCAGCCTAAAGCTATTGGCCATAGAACAACTCCTTCAGCAATATCCTGAATTGTTGGGTGAATTAGTACTTGTCCAGATTGTAAATCCACCAAGGAGTACTGGTAAGGATGTAGTGGAGGCAAGGAACGAGATGCACATTATTGCCAACAGGATAAATGAAAGGTTTGGTTTGCTAGATTATGAACCAGTCATCATCATCAATCGTCATGTCCCGTTATATGAGAAGGCATCCTACTATGCTTTAGCAGAATGTTGCGTTGTGAATGCAGTGCGGGATGGCATGAATTTGGTTCCTTACGAGTACATTGTCTGCAGGCAGGGGAGTCCTAAAATGGATGAAGCTTTAGACATTGGCTCTTCTGAGTCACCTCGTACAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCTTCTCTTAGTGGGGCAATCAGGGTAAACCCATGGGACATTAATGCTGTAGCTGATGCACTGAATTTGGCCATCACAATGCCCAGTCGAGAGAAACAGTTGCGGCATGAGAAGCACTATCGATATATTAGCTCTCATGATGTAGCTTACTGGGCCAAAAGTTTTGTGCAAGATCTTGTGTATTCATGCCAGGATCACTATAGTAAGAATCGCTGGGGGATTGGCTTGGGCCTTAATTTCAGAGTTTTGTCCCTTTCTCCTACTTTCAGGAAGCTTAACAAAGGCCACGTTGTTTCTGCATATGAAAGGACAAATTGCAGGGCATTCTTTTTGGATTATGATGGAACGGTTGTACCTTCCATTGTTAAAACTCCGAGTCCTGAAATCATGGATGTTCTAAATAACCTTTGCAGTGACCCTAAGAACACTGTGTTTATAGTAAGTGGCAGGGGGAAAACCACACTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTATCTAAAATGGAATCAACAGTCAACTTGGGAAATGAACCATGTAAGTACCGGTTTTTCTTGGAAAGAGATTGTTGAACCTGTGATGAGATTGTATACTGAGGCAACAGATGGCTCCTATATAGAAACCAAAGAGAGTGCCTTGGTATGGCACTACTATGATGCTGATCCTGATTTTGGATCTTGGCAAGCCAAGCAGCTGTTGGATCACCTTGAATGCTTATTTGCAAACGAACCGGTAACTGTAAAGAAAGGAAAGCATATTATCGAAGTCAAGTCACAGGGGATTACTAAAGGGTTAGTTGTAGAGGACATTCTGTCCAAGATGACCAAGAATGGGAAATCACCAGATTTTGTACTGTGCATAGGGGATGATAGATCTGACGAGGACATGTTTGAGAGCTTGCTGAATAAAGTTTACAGTGGAACCTCTTCTCCTGCACCAGAAATCTTTGCATGCACTGTTGGTCAGAAACCAAGTAAAGCTAGGTACTATTTAGATGATACTGAAGATGTGATGAGGTTACTTCAAGCTCTTGATACCATTTCAGGGCCTAAATCAACGGTTCCTGAAGAAGACTCTTCTGGAAAAACAGAAGAAGCCTGTTTTGACATTTGA 2598 0.4103 MVVRSCSNLSDLVSEDSLNSPQTPGALPRRLSVPEIMSDVDGKLRDNDDSNAFSSELHQKKIIIVANFLPLNAQKDEISGRWCFTYDEDSILLPLKDGPSSDTEVLYVGSLKVDVDASEQEKVSLQLLEEFNCLPTFIPSDIQKQFYNGFCKQHLWPLFHYMLPLYPDNCNRFDKSLWQAYVSANKIFADKVMEVMNPEHDYVWVHDYHLMVIATFLRKRYSWIKIGFFLHSPFPSSEIYRALPVRDEILKALLNADLIGFHTFDYAHHFLSCCSRILGLEYESKRGYIKLEYFGRTIFIKILPVGIHMDRLQSALNHPSFLFNVREMWEKFKEKKLILGVDDMDIFKGISLKLLAIEQLLQQYPELLGELVLVQIVNPPRSTGKDVVEARNEMHIIANRINERFGLLDYEPVIIINRHVPLYEKASYYALAECCVVNAVRDGMNLVPYEYIVCRQGSPKMDEALDIGSSESPRTSALVVSEFIGCSPSLSGAIRVNPWDINAVADALNLAITMPSREKQLRHEKHYRYISSHDVAYWAKSFVQDLVYSCQDHYSKNRWGIGLGLNFRVLSLSPTFRKLNKGHVVSAYERTNCRAFFLDYDGTVVPSIVKTPSPEIMDVLNNLCSDPKNTVFIVSGRGKTTLSEWFDQCENLGIAAEHGYYLKWNQQSTWEMNHVSTGFSWKEIVEPVMRLYTEATDGSYIETKESALVWHYYDADPDFGSWQAKQLLDHLECLFANEPVTVKKGKHIIEVKSQGITKGLVVEDILSKMTKNGKSPDFVLCIGDDRSDEDMFESLLNKVYSGTSSPAPEIFACTVGQKPSKARYYLDDTEDVMRLLQALDTISGPKSTVPEEDSSGKTEEACFDI 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01390 865 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 839 IPR001830 GO:0003824|GO:0005992
Pumo4g01390 865 Pfam Glycosyltransferase family 20 61 546 IPR001830 GO:0003824|GO:0005992
Pumo4g01390 865 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 546 - -
Pumo4g01390 865 Gene3D - 593 708 IPR023214 -
Pumo4g01390 865 Gene3D - 722 852 IPR023214 -
Pumo4g01390 865 FunFam Alpha,alpha-trehalose-phosphate synthase 315 531 - -
Pumo4g01390 865 SUPERFAMILY HAD-like 594 839 IPR036412 -
Pumo4g01390 865 CDD GT20_TPS 61 546 IPR001830 GO:0003824|GO:0005992
Pumo4g01390 865 FunFam Trehalose-6-phosphate synthase 10 722 850 - -
Pumo4g01390 865 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0003824|GO:0005992
Pumo4g01390 865 NCBIfam trehalose-phosphatase 594 839 IPR003337 GO:0003824|GO:0005992
Pumo4g01390 865 Gene3D Glycogen Phosphorylase B; 314 531 - -
Pumo4g01390 865 Gene3D Glycogen Phosphorylase B; 52 313 - -
Pumo4g01390 865 NCBIfam HAD-IIB family hydrolase 596 794 IPR006379 -
Pumo4g01390 865 MobiDBLite consensus disorder prediction 1 26 - -
Pumo4g01390 865 CDD HAD_TPP 595 834 - -
Pumo4g01390 865 MobiDBLite consensus disorder prediction 844 865 - -
Pumo4g01390 865 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 708 - -
Pumo4g01390 865 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 313 - -
Pumo4g01390 865 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01390 Pumo-Chr4 17615950 17618884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01390 1 864 Trehalose Biosynthesis Gene Families AT1G23870 63.972 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01390 K16055 - gmx:100808800 1646.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01390 4 17615950 17618884 Pumo10g02063 10 27692946 27696053 PCT