Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01386 ATGCGCAGCATTCAACTTGAAGCCAAGCAAAATGATGATGATGATTTGAACTTGAAGTACTCATATTATGATCCTCAATCTCCTTTCTCAGCATTCCAAACTCCCAACGAAGGTAACATCAACAGCGAGAAAGAAGCAACAACGACATCATCATCATCATCTCTCAGCAGAATCAGTCCACTCATTTTACTAGTCATAATAGTTCTAGCAGTTATCTTCTTCGTCTATGGACTAGTCCATTTGGTTCTACGGTTCTTCATGAAGAGGCCATCCCCTTCCTCTCTCTACAACTCTAACAGGTTCCACGAATCCACACGCTCCCGTGTTCTCCAAAGGCAGCTTCAGCAACTCTTCCGCTTGCACGATTCAGGTCTGGACCAAGCCCTCATAGACTCTCTACCCGTTTTCTATTACCAAGACTTGTTGGGGTCGAAGGAACCGTTCGATTGTGCCGTGTGTTTGTGTGAGTTCTCTGAAGAAGACAAGCTGAGGTTGCTTCCTATGTGCACGCACGCCTTTCACATGAACTGCCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTCTCCGAGTACATGGAGAATCAGAATCAGAATGGAATGTTTAATGTTGGCAATTCCAATTCTTTGGTTCTGCCAAATAGGTTCAGAGGCGAGGAAGAGAATCATAACGGGTGTTCAGAGAGTCAAAGATCAGTGGAGAAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAACAATGGAATGGAGGGTGGAGAGGTAGGAGGAGATGGTAGTTGTAGTTTGAATGAGAGGAGATGTTACTCTATGGGTTCATATAGGTATGTGGTTCGTGATTTGAATTTGCAAGTGGTTTTGTCTGAATCTCATGGTGATGTTTTGGAAAATGGGAATGTGGAGGGGAAGAGGATTGGCGACTCAACCAAAGGTGTTGATGCTACAGTAACATTCAATGACCCGGAAGAAGAAACCAACGACGGAGAAGGGATTGATGGGGAGGTTGCTTTACCTGCTGAAGATGCCAAAGTAAATGGAAAGAAAAAGGGAAGGAAGAGGATTTCAGCTACACAGTCCAAAACAAAGTCAGTGAAAAGGCCACAAGGAAGTCCCAAAGGTTCAACTTCTACCCAAGCTGAAGGTGTAATACCTCCACAACTTGAGATGTCTCCACAACTTGGGGATGAAGAATCCCCTTTTATCACAATACACGCCAATGGTAACATGCCACCTAGCCTCCAACGGTTCTTTTTCAAAATAAAATAA 1284 0.4439 MRSIQLEAKQNDDDDLNLKYSYYDPQSPFSAFQTPNEGNINSEKEATTTSSSSSLSRISPLILLVIIVLAVIFFVYGLVHLVLRFFMKRPSPSSLYNSNRFHESTRSRVLQRQLQQLFRLHDSGLDQALIDSLPVFYYQDLLGSKEPFDCAVCLCEFSEEDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSEYMENQNQNGMFNVGNSNSLVLPNRFRGEEENHNGCSESQRSVEKRVFSVRLGKFRNNGMEGGEVGGDGSCSLNERRCYSMGSYRYVVRDLNLQVVLSESHGDVLENGNVEGKRIGDSTKGVDATVTFNDPEEETNDGEGIDGEVALPAEDAKVNGKKKGRKRISATQSKTKSVKRPQGSPKGSTSTQAEGVIPPQLEMSPQLGDEESPFITIHANGNMPPSLQRFFFKIK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01386 427 FunFam RING-H2 finger protein ATL46 112 197 - -
Pumo4g01386 427 SUPERFAMILY RING/U-box 129 207 - -
Pumo4g01386 427 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Pumo4g01386 427 SMART ring_2 150 191 IPR001841 -
Pumo4g01386 427 MobiDBLite consensus disorder prediction 304 402 - -
Pumo4g01386 427 CDD RING-H2_EL5-like 149 192 - -
Pumo4g01386 427 MobiDBLite consensus disorder prediction 366 389 - -
Pumo4g01386 427 MobiDBLite consensus disorder prediction 29 49 - -
Pumo4g01386 427 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 52 295 - -
Pumo4g01386 427 Pfam Ring finger domain 149 192 IPR001841 -
Pumo4g01386 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 202 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01386 Pumo-Chr4 17587721 17590068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01386 47 294 C3H Transcription Factor Family AT2G18650 42.123 9.41e-49 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01386 4 17587721 17590068 Pumo4g01386 4 17587721 17590068 ECH