Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01379 ATGTGGAAATCCCCCACGCGTGCTCACTCTATTGTAACCGTTGATGTTTCTTCTTCTCCGTCGTCGTCGTCGTCTTCAGTTGATTCGTTCTATAAGGATGGTCGCAAAATTAGTGCCGGTGACTGTGCTCTCTTCAAACCACCTAAAGACTGCCCGCCTTTCATTGGAATAATTCGTTGTGTGACAGTTGGTAAAGAGAATAAATTGAAGTTAGGTGTTAATTGGCTTTATCGACCCATTGAAGTAAGACTAGGCAAGGATTTGCTGTTGGAGAGTGCTCCAAACGAAATTTTCTACTCCTTTCACAGGGATGAGATTCCTGCTACATCACTACTTCATCCTTGTAAAGTTGCATTTCTTCCAAAAGGTGTTGAGCTTCAATCAGGGCTTCCGTCATTTGTATGCAGGAGGGTTTATGATGTTCTGAACAAGCGTTTACGTTGGCTAAGTGATCAAGATTATATTGATGATTGTCAAGAAGAAGTAGATAAGCTATTACATAGGACTCGTGTAGAAATGCATGCAACAGTGCAGCCAGGTGGTCGATCTCCTAAGCCAGTGGGTAGTCCGACATCAACATCACAGTTAAAATCTGGTTCAGATAGTGTCCAGAACAGTGTCTCTTCCTTTTCTTCTCATGTTAAGGGTAGGAAAAGGGAGAGGGTAGATCAAGGGCAAGAATCTGTAAAGCGAGAACGTTCAACCAAAAATGACGATGGAGATCCTGGTCATTTTAAGCAGGATAGCATTTTGAAGACAGAGATTGCCAAAGTAACAGAGAACGGAGGCCTTATTGATACTGAAGGGGTTGAGAAATTAGTGCAGCTGATGGTTCCTGATGGAAATGAGAAAAAGATTGATTTAGCTAGCCGGTCAATGCTTGCAGCTGTAATTGCAGCAACAGATAAATTTGATTGCCTTAGTCGGTTTGTGCAACTGAAGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGCTCATAAAGGGAAGATTGGTGATGGAATTGGGTCTAGGGATGGTGATAAATCTGTTGATGACTTTCTTTTGGTATTACTCCGAGCACTAGACAAGCTTCCAGTAAACCTTCAGGCTCTACAAGCTTGTAACATTGGTAAATCTGTGAATCATTTGCGAACTCATAAAAACTCAGAAATTCAGAAGAAAGCAAGGGGCTTAGTTGACACATGGAAAAAACGTGTTGAAGCTGAAATGATTAAAAATGATGCTAAGTCTGGTTCAGTTCAGACTGTACCCTGGCCTGCCAGACAACGTCTTTGTGAAGTTGCTCAAGGTGGGAATAGACATTCGAGTGGGTCAGCTGATGTTGCCACGAAGAGCTCAGTTACACAGCTTTCTGCATCCAAAAGTGCCTCTGCGAAGATTGTCCCAGCAGAGAATACTACAAGATCTACATCTGCATCTCCAGGGTCTACGAAATCAGAGCCTTCACCTGCACCCGCAACCGTGAACTCGAAAGATGGACAGCCCCGTGTTGCTGCTGTTAGTGGTTCCTCTGATCTTCCTGTGGCAAATGCAAGGGATGAGAAAAGTAGCAGTTCTAGTCCATCTCACAACAGTCAATCTTATTCCAGTGACCATGCCAAAGCTGGGGGTCTCTCAGGAAAGGAGGATGCCAGGAGCTCTACTGCAAAGAGTGTGAATAAGGTATCAGGAGGCTCTTCACGGCACCGAAAATATATGAATGGATTTCCAGGTTCAACTCCATCTAGAAGGCAAAGGGAAACTGGGTCAAGCAGAAATTCCTCACACAAAAATTTAATTTCAGAGAAAATATCTCAATCTGGATTAAGGGAAAAAGCACATAAGGGAAGTACTCTTGAGGGGCATACTCCGAAGCTGATTGTTAAGATCCCAAACCAAGGTCGAAGTCCTGCACAAAGTGCCACTGCAGGTTCTTCTGATGATCCTTCAATCATGAACAGTCGAGCTTCATCTCCTGTTCTTTCAGAGAAGCATGATCAGTTTGATCGCTGCTCAAAGGAAAAGAGTGATTTTTATCAAGCTAATATTGGTGCAGACATTAATACAGAATCCTGGCAGAGTAACGATTTCAAAGATGTATTGACTGGGTCTGATGAGGGTGATGGATCACCAGCAGCCATTACTGATGAACACTGTAGGACTGGTGAGGATTGTAAGAAAGTATTAGATGTATCAAAGACAGCTTCTTCATCATCTGGGAATGAAACTAAAGCCAGAAATTTGCAGGAGGCTTCTTACAGCTCCATCAATGCTCTTATTGAAGGTGTTAAGTACACTGAAGCTGATGATATTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATCTCAAAATCTGAATTGGGAATGCCAGCTGGATCCCCTGAAAAAGATACCACTACTATTGAACAGTCATATGCAGGTGATGCTGCAGTAGTCAAGTCCTCTGAAGAATATCCTGTTCAGGATAAGTGCTACTCAAATGCTGAACATATGAAGCATGATTCTGGATCTGGTGATTTAGGGGCAGATGATGATATTTTGGCATCTGAAGGGAAAGCTACAGGAGAACACAATATGGATATTAATTCATCTAGTATGGATTTACTGGTTACTGAAACTAGTTTAGAAAGCAAAGGAAAATTATTTGAAAAATCATCTGGTACTTCATCTGCTGGCATTCCTGAAAGCACAGTTCAAGAAGTCAGAGATGGTGACTCTAGCAAATTGCTAAAGGAAAAGAAGGTTGTTGTGAAAGTGGATGCAGTTGATAATCTTGATGTTAAGGTCAATGTTGTTGCAGGAGAAAGTGAAGCAGAGGCAATTGAAAAATCGTCATACCCCTCTGAAGAAGTTGATGTCAAGTGTGATAACCGTGCTACTGAAGGACTAAACTGTGACAAAGAGACAGTTGGAAAGTCTCCTGCCATTTGTGTGCCAGATGATATTGCTGCTCAGGATGAGAATGTACTCCAATCATCATCTGGTTACTGTGTTGATAAGGTTCCTGAACACCTAAATGAAAGGGAATCTGAAAAAAATGATGATATTGCTGCTCAGGATCATGCTAAGCAGTCTACAAAGCAAAAAAATGAGTCTGAGAATGATGCTATTATGGTGCCTGAGAACAGAGGTTTCTCAGGTGCAACTGATCTTGATGCTGAATATGTGGAAGAGAATTCAGGAACAAAAGAGGTTTGCAACCGAGATGCAGGAGCAGAAAAGATACTGCACACAGATTTACCTAGCTTTCCTTCACAAGAAATGGATCAGCGTTCAGGTCATAAAGATTCAAAATTGGCTGCCATTGAATCAGAGGAAGCAGTGGAATGCACCTCTACCACTGGAGATGCCTCTTCTGCATCTGTTGCTGGTTTTTCAGAAGTGGACGCAAAAGTTGAATTTGATTTAAATGAAGGGTTCAATGCAGATGATGGGAAGTGTAGTGAGATGCCTGGGTGTACACCTGCTGCAAGATTGGTCAGTCCTGTTCCATTTTCTGCTTCATCCATGTCTTTTGGTATTCTCTCGATCACAGTAGCTGCCGCTGCAAAGGGCCCCTTTGTGCCACCTGAAGATTTATTGAAAAGTAAAAGGGAGCTTGGTTGGAAGGGATCAGCTGCTACTAGTGCATTTCGGCCAGCTGAGCCCAGGAAAGTTATGGAAATGCCTCTTGATATGTCTACTACCCCTATTCCTAATGATGCAGCTAGAAAGCAGAGTCGGGCACCATTGGATATTGACTTGAATGTTGCTGATGAAATAATACTTGATGATCTTTCTTCTCAAAACTGTGCTCATCAGACAGATTGTGTAACTCATTCAGAAGATGGTCATGATCCAAATAAATCAATGGCCTCACATGTTCGTTGTTCTGGAGGACTAGGTCTTGACTTGAACTTGGTGGATGGAGCTTCTGACGTGGGCAATTGCACCTTAAGCAGTAGTCATAAAATGGATGTACCACTTACACAGGTGAAATCAGCAGCCAGTGGTCCTCAAAATGGAGAGATGAGTGTCCGCAGGGATTTTGATCTGAATGATGGGCCTGTAGTTGATGAAGTCACCACTGAACCTTTGATGTCCACACAACCCGCCAGGAATAGTGTACCATCTCAACCACCTATTTCTGGACTTAGGATGAGTAATGCTGAAGTAGGCAACTTCTCTTCTTGGTTTCCTTCCACTGGGAACACCTACTCAGCTGTAACAATATCTTCGATTATGTCTGATAGAGGTGATAAGTCCTTTTCAATTGTTGCCCCTAATGGGCCACAAAGGATGTTGGGTCCTGCAACTGGCAGCAACCCATTTGGACCTGATATTTATAGGGGGGCAGTTTTGTCTTCTTCTCCTGCAGTGCCATATCAATCTGCACCATTTCAGTATCCTGTCTTCCCTTTCAATTCCAGCTTTCCTCTTCCTTCAGCATCATTTTCTGGTGGATCAACTCCTTATGTAGATACAGCTTCAGGAGGGAGGCTTTGCTTCCCTACAGTAAATTCACAGCTTATAGGGTCTGTTGGTAATGTTTCAGCCCATTACCCCAGGCCTTACGTTGTCAGTCTCCCAGATGGTAGCAATAGTAGTAGTACTGAGAACAGTAGGAAAAGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGTTCAGACTTAGAGGGGAGAGATGAGAGCTCACCTCTTGTACCACGGCAACTTTCTGTTGCTAGTTCGCAGGCCCAACTTGAAGAGCAAGCAAGGATGTTTCACTTAAGCAGTGATGTTCTTAAAAGGAAGGAACCTGATGGGGGGTGGGATGGCTACAAGCAATCATCATGGCAGTACCATAATTTGTAA 4824 0.4314 MWKSPTRAHSIVTVDVSSSPSSSSSSVDSFYKDGRKISAGDCALFKPPKDCPPFIGIIRCVTVGKENKLKLGVNWLYRPIEVRLGKDLLLESAPNEIFYSFHRDEIPATSLLHPCKVAFLPKGVELQSGLPSFVCRRVYDVLNKRLRWLSDQDYIDDCQEEVDKLLHRTRVEMHATVQPGGRSPKPVGSPTSTSQLKSGSDSVQNSVSSFSSHVKGRKRERVDQGQESVKRERSTKNDDGDPGHFKQDSILKTEIAKVTENGGLIDTEGVEKLVQLMVPDGNEKKIDLASRSMLAAVIAATDKFDCLSRFVQLKGLPVFDEWLQEAHKGKIGDGIGSRDGDKSVDDFLLVLLRALDKLPVNLQALQACNIGKSVNHLRTHKNSEIQKKARGLVDTWKKRVEAEMIKNDAKSGSVQTVPWPARQRLCEVAQGGNRHSSGSADVATKSSVTQLSASKSASAKIVPAENTTRSTSASPGSTKSEPSPAPATVNSKDGQPRVAAVSGSSDLPVANARDEKSSSSSPSHNSQSYSSDHAKAGGLSGKEDARSSTAKSVNKVSGGSSRHRKYMNGFPGSTPSRRQRETGSSRNSSHKNLISEKISQSGLREKAHKGSTLEGHTPKLIVKIPNQGRSPAQSATAGSSDDPSIMNSRASSPVLSEKHDQFDRCSKEKSDFYQANIGADINTESWQSNDFKDVLTGSDEGDGSPAAITDEHCRTGEDCKKVLDVSKTASSSSGNETKARNLQEASYSSINALIEGVKYTEADDIGMNLLASVAAGEISKSELGMPAGSPEKDTTTIEQSYAGDAAVVKSSEEYPVQDKCYSNAEHMKHDSGSGDLGADDDILASEGKATGEHNMDINSSSMDLLVTETSLESKGKLFEKSSGTSSAGIPESTVQEVRDGDSSKLLKEKKVVVKVDAVDNLDVKVNVVAGESEAEAIEKSSYPSEEVDVKCDNRATEGLNCDKETVGKSPAICVPDDIAAQDENVLQSSSGYCVDKVPEHLNERESEKNDDIAAQDHAKQSTKQKNESENDAIMVPENRGFSGATDLDAEYVEENSGTKEVCNRDAGAEKILHTDLPSFPSQEMDQRSGHKDSKLAAIESEEAVECTSTTGDASSASVAGFSEVDAKVEFDLNEGFNADDGKCSEMPGCTPAARLVSPVPFSASSMSFGILSITVAAAAKGPFVPPEDLLKSKRELGWKGSAATSAFRPAEPRKVMEMPLDMSTTPIPNDAARKQSRAPLDIDLNVADEIILDDLSSQNCAHQTDCVTHSEDGHDPNKSMASHVRCSGGLGLDLNLVDGASDVGNCTLSSSHKMDVPLTQVKSAASGPQNGEMSVRRDFDLNDGPVVDEVTTEPLMSTQPARNSVPSQPPISGLRMSNAEVGNFSSWFPSTGNTYSAVTISSIMSDRGDKSFSIVAPNGPQRMLGPATGSNPFGPDIYRGAVLSSSPAVPYQSAPFQYPVFPFNSSFPLPSASFSGGSTPYVDTASGGRLCFPTVNSQLIGSVGNVSAHYPRPYVVSLPDGSNSSSTENSRKRTRQGLDLNAGPGSDLEGRDESSPLVPRQLSVASSQAQLEEQARMFHLSSDVLKRKEPDGGWDGYKQSSWQYHNL 1607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01379 1607 Pfam BAH domain 37 146 IPR001025 GO:0003682
Pumo4g01379 1607 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 305 412 IPR035441 -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 877 900 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 627 655 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 1517 1558 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 572 599 - -
Pumo4g01379 1607 ProSiteProfiles TFIIS N-terminal domain profile. 326 403 IPR017923 -
Pumo4g01379 1607 Pfam TFIIS helical bundle-like domain 351 400 IPR017923 -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 1002 1044 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 185 212 - -
Pumo4g01379 1607 SMART BAH_4 35 150 IPR001025 GO:0003682
Pumo4g01379 1607 Gene3D - 19 262 IPR043151 -
Pumo4g01379 1607 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 270 404 IPR035441 -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 213 248 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 430 498 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 511 534 - -
Pumo4g01379 1607 ProSiteProfiles BAH domain profile. 35 150 IPR001025 GO:0003682
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 1323 1342 - -
Pumo4g01379 1607 CDD TFIIS_I 325 401 - -
Pumo4g01379 1607 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1603 - -
Pumo4g01379 1607 SMART TFS2_5 323 402 IPR003617 GO:0005634
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 1002 1032 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 174 248 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 429 659 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 877 892 - -
Pumo4g01379 1607 MobiDBLite consensus disorder prediction 545 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01379 Pumo-Chr4 17507451 17514524 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pumo4g01379 BAH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01379 - - gmx:100806155 2432.52